Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g0205 ATGAATATGGATTTGGACTCTGTTTTTTCCTTCCCCATCAAATACACTGAGCATCTCAACCATGTTAAGCTCACTTCAATGCCGGAAATCAGGCCTAGAGTTGTACGGATTTCCGTCACCGACGGTGACGCTACAGATTCCTCCAGCGATGATGAGTCCGAAATGTTTGGTCGACACAGAGTTAAGAAATTTGTGAATGAAATTACGATCGAACCGTCTTGTTCTGGCGAAGGCAACGGAACCTGGGGTCTGAATAGATCGGCGAGGACTGGACTGAGACGCTCCACCGGGAAATGTGGGGTTTCGTCGAGGAATCGTCGGTCGGCGAAGGTCACTCCTGGGAAGAAGTTCCGTGGCGTGAGACAGAGGCCGTGGGGAAAATGGGCGGCGGAAATCAGAGACCCACTCCGCCGTGTACGCCTCTGGTTGGGAACTTACGACACGGCGGAGGAAGCCGCCATGGTTTATGACAACGCAGCCATTCAACTTCGGGGACCCGATGCACTCACCAATTTCACAACTCAACAACCCAAATCGTTCGCCGGAAAATGCTCTGGCTATAACTCTGGCGAGGAATCGAACAACAACATTTGCTCTCCGACCTCCGTCCTCCGATGTCCTTCTCCACCCATCGAAGAAGCCCAATCGCAAATCCCCGGCGAGCCGGACAACTCATGCGTGTCGGAAAATTTCTCGTCGGAGTTCTCCGACTTCTCGAGCTGCTCTGATACCTTTATTCCCGACGACATTTTCGCCTTCGAAACTTCGATTCCAACCTTATTCGACGAGATGGGCCTCCAAAATCAAACCAACTTCTTCAGCAACGACAGTTTTTTCAACGGCGTGCTCCACAGTCCGGTCGAAGAAATCGGATTCGGGTTCGAATACCCTCCACCTCCCGATGATTTCTTTCATGACTTCAGCGATGTGTTCGGGTCGGATCCTCTCGTCGCACTCTGA 960 51.88 MNMDLDSVFSFPIKYTEHLNHVKLTSMPEIRPRVVRISVTDGDATDSSSDDESEMFGRHRVKKFVNEITIEPSCSGEGNGTWGLNRSARTGLRRSTGKCGVSSRNRRSAKVTPGKKFRGVRQRPWGKWAAEIRDPLRRVRLWLGTYDTAEEAAMVYDNAAIQLRGPDALTNFTTQQPKSFAGKCSGYNSGEESNNNICSPTSVLRCPSPPIEEAQSQIPGEPDNSCVSENFSSEFSDFSSCSDTFIPDDIFAFETSIPTLFDEMGLQNQTNFFSNDSFFNGVLHSPVEEIGFGFEYPPPPDDFFHDFSDVFGSDPLVAL 319
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 1998563 1999522 - ClG42_01g0020500.10 Clacu01g0205 239589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g0205 319 Gene3D AP2/ERF domain 115 175 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu01g0205 319 ProSiteProfiles AP2/ERF domain profile. 116 173 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu01g0205 319 MobiDBLite consensus disorder prediction 93 108 - -
Clacu01g0205 319 SUPERFAMILY DNA-binding domain 116 174 IPR016177 GO:0003677(InterPro)
Clacu01g0205 319 MobiDBLite consensus disorder prediction 93 117 - -
Clacu01g0205 319 CDD AP2 115 172 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu01g0205 319 SMART rav1_2 116 179 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu01g0205 319 PRINTS Ethylene responsive element binding protein signature 117 128 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu01g0205 319 PRINTS Ethylene responsive element binding protein signature 139 155 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu01g0205 319 Pfam AP2 domain 116 165 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu01g0205 319 FunFam Ethylene-responsive transcription factor 2 115 174 - -
Clacu01g0205 319 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 35 225 IPR050913 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0063 Clacu-Chr1:574054 Clacu01g0205 Clacu-Chr1:1998563 4.10E-37 dispersed
Clacu01g0205 Clacu-Chr1:1998563 Clacu05g0131 Clacu-Chr5:1301609 8.50E-34 dispersed
Clacu01g0205 Clacu-Chr1:1998563 Clacu05g1020 Clacu-Chr5:9025387 2.20E-50 wgd
Clacu01g0205 Clacu-Chr1:1998563 Clacu07g1498 Clacu-Chr7:29573791 3.50E-72 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46941 PF00847 AP2 1.20E-13 CL0081 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g0205 - - - 0.0