Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu01g0205 | ATGAATATGGATTTGGACTCTGTTTTTTCCTTCCCCATCAAATACACTGAGCATCTCAACCATGTTAAGCTCACTTCAATGCCGGAAATCAGGCCTAGAGTTGTACGGATTTCCGTCACCGACGGTGACGCTACAGATTCCTCCAGCGATGATGAGTCCGAAATGTTTGGTCGACACAGAGTTAAGAAATTTGTGAATGAAATTACGATCGAACCGTCTTGTTCTGGCGAAGGCAACGGAACCTGGGGTCTGAATAGATCGGCGAGGACTGGACTGAGACGCTCCACCGGGAAATGTGGGGTTTCGTCGAGGAATCGTCGGTCGGCGAAGGTCACTCCTGGGAAGAAGTTCCGTGGCGTGAGACAGAGGCCGTGGGGAAAATGGGCGGCGGAAATCAGAGACCCACTCCGCCGTGTACGCCTCTGGTTGGGAACTTACGACACGGCGGAGGAAGCCGCCATGGTTTATGACAACGCAGCCATTCAACTTCGGGGACCCGATGCACTCACCAATTTCACAACTCAACAACCCAAATCGTTCGCCGGAAAATGCTCTGGCTATAACTCTGGCGAGGAATCGAACAACAACATTTGCTCTCCGACCTCCGTCCTCCGATGTCCTTCTCCACCCATCGAAGAAGCCCAATCGCAAATCCCCGGCGAGCCGGACAACTCATGCGTGTCGGAAAATTTCTCGTCGGAGTTCTCCGACTTCTCGAGCTGCTCTGATACCTTTATTCCCGACGACATTTTCGCCTTCGAAACTTCGATTCCAACCTTATTCGACGAGATGGGCCTCCAAAATCAAACCAACTTCTTCAGCAACGACAGTTTTTTCAACGGCGTGCTCCACAGTCCGGTCGAAGAAATCGGATTCGGGTTCGAATACCCTCCACCTCCCGATGATTTCTTTCATGACTTCAGCGATGTGTTCGGGTCGGATCCTCTCGTCGCACTCTGA | 960 | 51.88 | MNMDLDSVFSFPIKYTEHLNHVKLTSMPEIRPRVVRISVTDGDATDSSSDDESEMFGRHRVKKFVNEITIEPSCSGEGNGTWGLNRSARTGLRRSTGKCGVSSRNRRSAKVTPGKKFRGVRQRPWGKWAAEIRDPLRRVRLWLGTYDTAEEAAMVYDNAAIQLRGPDALTNFTTQQPKSFAGKCSGYNSGEESNNNICSPTSVLRCPSPPIEEAQSQIPGEPDNSCVSENFSSEFSDFSSCSDTFIPDDIFAFETSIPTLFDEMGLQNQTNFFSNDSFFNGVLHSPVEEIGFGFEYPPPPDDFFHDFSDVFGSDPLVAL | 319 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 1998563 | 1999522 | - | ClG42_01g0020500.10 | Clacu01g0205 | 239589 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu01g0205 | 319 | Gene3D | AP2/ERF domain | 115 | 175 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Clacu01g0205 | 319 | ProSiteProfiles | AP2/ERF domain profile. | 116 | 173 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Clacu01g0205 | 319 | MobiDBLite | consensus disorder prediction | 93 | 108 | - | - | |
Clacu01g0205 | 319 | SUPERFAMILY | DNA-binding domain | 116 | 174 | IPR016177 | GO:0003677(InterPro) | |
Clacu01g0205 | 319 | MobiDBLite | consensus disorder prediction | 93 | 117 | - | - | |
Clacu01g0205 | 319 | CDD | AP2 | 115 | 172 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Clacu01g0205 | 319 | SMART | rav1_2 | 116 | 179 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Clacu01g0205 | 319 | PRINTS | Ethylene responsive element binding protein signature | 117 | 128 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Clacu01g0205 | 319 | PRINTS | Ethylene responsive element binding protein signature | 139 | 155 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Clacu01g0205 | 319 | Pfam | AP2 domain | 116 | 165 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Clacu01g0205 | 319 | FunFam | Ethylene-responsive transcription factor 2 | 115 | 174 | - | - | |
Clacu01g0205 | 319 | PANTHER | SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR | 35 | 225 | IPR050913 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu01g0063 | Clacu-Chr1:574054 | Clacu01g0205 | Clacu-Chr1:1998563 | 4.10E-37 | dispersed | |
Clacu01g0205 | Clacu-Chr1:1998563 | Clacu05g0131 | Clacu-Chr5:1301609 | 8.50E-34 | dispersed | |
Clacu01g0205 | Clacu-Chr1:1998563 | Clacu05g1020 | Clacu-Chr5:9025387 | 2.20E-50 | wgd | |
Clacu01g0205 | Clacu-Chr1:1998563 | Clacu07g1498 | Clacu-Chr7:29573791 | 3.50E-72 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
46941 | PF00847 | AP2 | 1.20E-13 | CL0081 | Clacu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu01g0205 | - | - | - | 0.0 |