Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g0206 ATGGAAGCTCTGTGGATTTTCAGCTTCGTTGTGGTTCTGGGGTTGGTTTTTTCGCCAATTAATGGCGACCCAGTTGAAGACAAGCGAGCTCTGCTTGATTTTGTCAAGAATCTCCCTCACTCTCGCTCTCTTAATTGGAATGCGGCTTCTCCGGTTTGTCATTACTGGACTGGTATAACTTGCAGTCAAGATGAATCTCGTGTTATAGCCGTTCGATTGCCCGGAGTTGGCTTTCACGGCCCGATTCCAGCGAATACTCTTAGCCGGCTATCGGCACTGCAAATATTGAGTCTCAGATCCAATCGTATAACGGGGGATTTCCCTTTGGATTTCTCGAATCTTAGTAACTTGTCTTATCTTTATCTTCAGTTCAACAACTTCTCTGGGCCATTGCCTTCCAATTTCTCTGTCTGGAAGAATCTCACCTTTGTGAATCTCTCTAATAATGGCTTCAATGGCCGTATTCCACATTCGCTTTCTAATCTGACAGCACTCACAGGTTTGAATCTGGCAAACAACTCTCTTTCAGGAGAAATACCTGACCTCCAAATCCCCAGATTGCAGGTTTTGGATTTGTCTAACAACAATCTGAGTGGGAGTGTGCCTAAATCTTTACAGAGATTTCCAAAGTCTGTATTTGTAGGCAATGACATATATTTTGGAAGTTCTTTATTAAACAATCCTCCCGTACCCGCGCCATTGCCTGTGTCGAATGAAAAGCCAAAGAATGCTGGTGGGCTTGGAGAAGCAGCATTGTTAGGAATTATAATTGCTGGTGGTATTTTGGGGCTTCTGGCATTTGGCTTTCTAATCCTTGTTTGCTTCTCAAGAAGGAAGAGGGAAGATGAATATTCTGGGGATCTTCAGAAAGGTGGAATGTCGCCTGAAAAAGTGATATCAAGGACTCAAGATGCAAACAACAGATTGGTTTTCTTTGAGGGGTGTCATTATGCATTTGACTTGGAGGATTTGTTGAGAGCTTCTGCTGAGGTCTTGGGGAAGGGAACTTTTGGTACTGCATATAAAGCAATTCTAGAGGATGCCACCACAGTTGTTGTTAAGAGGTTGAAGGATGTAAGCGCTGGGAAACGCGATTTTGAGCAGCAAATGGAGATTGTTGGCAGTATCAGGCACGAGAATGTGGTTGAATTGAAGGCTTACTATTATTCCAAAGATGAGAAGCTGATGGTTTATGATTTCTTTGGTCAGGGAAGCGTCTCGGCCATGTTACACGGTAAACGCGGAGAGGAAAAAACTCCATTAGATTGGGACACTAGACTGAGAATTGCAGTTGGTGCAGCACGAGGAATCGCCCGTGTCCATGCCGAAAATGGTGGGAAACTCGTCCATGGAAATGTGAAATCCTCAAACATCTTTCTGAACTCTCAACAGTATGGATGTGTGTCTGATCTTGGACTAGCAACTATAACAAGCTCACTCTCTCCACCTATATCCCGCGCTGCTGGTTACCGAGCCCCAGAAGTGACAGACACTCGGAAGGCGACACAAGCTTCAGATGTTTTCAGCTTCGGTGTCGTGCTCCTCGAGCTTCTAACCGGAAAGTCTCCAATTCATGCAACAGGCGGCGAAGAGATTGTTCATTTGGTTAGATGGGTTCATTCAGTTGTCCGAGAGGAGTGGACAGCTGAGGTATTTGATGTAGAGCTGATGAGATATCCCAACATAGAGGAAGAAATGGTTGAGATGTTACAAATAGCCTTATCATGTGTAGCCAGGATACCTGACCAGAGACCCAAAATGGCGGAAATTGTGAAGATGATCGAAAGTGTTCGACCAATGGAAGCCGAGAATCGACCTTCTTCCACGAACCGATCTGAAAGTTTGATGCCGCCGCAAGCTGTTGAGACAGAAAATTCAACCCCTCAGCAAAACAACAAACACGCAGGAGGATCTCAAGAGTTTCAACTCTTTTGGATTTTGGTGATGGCTTCGAAGCGGATCTTGAAAGAGCTCAAGGATCTCCAGAAGGATCCTCCTACGTCTTGCAGTGCAGGCCCAGTAGCTGAAGACATGTTCCATTGGCAAGCAACAATTATGGGCCCTCCTGACAGTCCTTATGCAGGAGGAGTGTTTCTTGTCAACATTCACTTCCCTCCAGATTATCCGTTTAAACCACCCAAGGTTGCATTCAGAACAAAAGTCTTTCATCCCAATATCAACAGCAACGGTAGCATATGCCTCGACATACTTAAGGAACAGTGGAGTCCTGCACTAACCATTTCCAAGGTGTTACTTTCGATCTGCTCACTGCTAACGGACCCGAATCCTGATGATCCTTTGGTGCCAGAGATTGCACACATGTATAAGACTGACAGAAGCAAGTACGAGGCAACCGCCAGAAGCTGGACCCAGAAGTATGCTATGGGTTAG 2391 45.34 MEALWIFSFVVVLGLVFSPINGDPVEDKRALLDFVKNLPHSRSLNWNAASPVCHYWTGITCSQDESRVIAVRLPGVGFHGPIPANTLSRLSALQILSLRSNRITGDFPLDFSNLSNLSYLYLQFNNFSGPLPSNFSVWKNLTFVNLSNNGFNGRIPHSLSNLTALTGLNLANNSLSGEIPDLQIPRLQVLDLSNNNLSGSVPKSLQRFPKSVFVGNDIYFGSSLLNNPPVPAPLPVSNEKPKNAGGLGEAALLGIIIAGGILGLLAFGFLILVCFSRRKREDEYSGDLQKGGMSPEKVISRTQDANNRLVFFEGCHYAFDLEDLLRASAEVLGKGTFGTAYKAILEDATTVVVKRLKDVSAGKRDFEQQMEIVGSIRHENVVELKAYYYSKDEKLMVYDFFGQGSVSAMLHGKRGEEKTPLDWDTRLRIAVGAARGIARVHAENGGKLVHGNVKSSNIFLNSQQYGCVSDLGLATITSSLSPPISRAAGYRAPEVTDTRKATQASDVFSFGVVLLELLTGKSPIHATGGEEIVHLVRWVHSVVREEWTAEVFDVELMRYPNIEEEMVEMLQIALSCVARIPDQRPKMAEIVKMIESVRPMEAENRPSSTNRSESLMPPQAVETENSTPQQNNKHAGGSQEFQLFWILVMASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVNIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYEATARSWTQKYAMG 796
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2017868 2030120 - ClG42_01g0020600.10 Clacu01g0206 239590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g0206 796 Gene3D Phosphorylase Kinase; domain 1 293 400 - -
Clacu01g0206 796 Pfam Ubiquitin-conjugating enzyme 653 789 IPR000608 -
Clacu01g0206 796 ProSitePatterns Protein kinases ATP-binding region signature. 332 363 IPR017441 GO:0005524(InterPro)
Clacu01g0206 796 SUPERFAMILY L domain-like 37 208 - -
Clacu01g0206 796 MobiDBLite consensus disorder prediction 602 636 - -
Clacu01g0206 796 SUPERFAMILY Protein kinase-like (PK-like) 330 594 IPR011009 -
Clacu01g0206 796 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 649 795 IPR000608 -
Clacu01g0206 796 CDD UBCc 651 790 IPR000608 -
Clacu01g0206 796 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 722 737 IPR023313 -
Clacu01g0206 796 Pfam Leucine Rich Repeat 186 207 IPR001611 GO:0005515(InterPro)
Clacu01g0206 796 Pfam Leucine Rich Repeat 140 162 IPR001611 GO:0005515(InterPro)
Clacu01g0206 796 MobiDBLite consensus disorder prediction 599 636 - -
Clacu01g0206 796 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 401 608 - -
Clacu01g0206 796 Pfam Leucine rich repeat N-terminal domain 26 62 IPR013210 -
Clacu01g0206 796 PANTHER OS05G0588300 PROTEIN 8 610 IPR050994 -
Clacu01g0206 796 Gene3D Ubiquitin Conjugating Enzyme 646 796 IPR016135 -
Clacu01g0206 796 Pfam Leucine rich repeat 82 127 IPR001611 GO:0005515(InterPro)
Clacu01g0206 796 SUPERFAMILY UBC-like 644 795 IPR016135 -
Clacu01g0206 796 FunFam pollen receptor-like kinase 1 295 400 - -
Clacu01g0206 796 SMART ubc_7 652 795 - -
Clacu01g0206 796 ProSiteProfiles Protein kinase domain profile. 326 597 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu01g0206 796 Gene3D Ribonuclease Inhibitor 25 226 IPR032675 -
Clacu01g0206 796 FunFam Ubiquitin-conjugating enzyme 28, E2 649 796 - -
Clacu01g0206 796 Pfam Protein tyrosine and serine/threonine kinase 330 593 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu01g0206 796 Gene3D Transferase(Phosphotransferase) domain 1 402 619 - -
Clacu01g0206 796 FunFam Probable inactive receptor kinase RLK902 24 183 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0064 Clacu-Chr1:583288 Clacu01g0206 Clacu-Chr1:2017868 1.70E-84 dispersed
Clacu01g0066 Clacu-Chr1:593546 Clacu01g0206 Clacu-Chr1:2017868 1.10E-152 dispersed
Clacu01g0206 Clacu-Chr1:2017868 Clacu02g1944 Clacu-Chr2:32996160 8.90E-133 dispersed
Clacu04g0538 Clacu-Chr4:18621707 Clacu01g0206 Clacu-Chr1:2017868 5.70E-23 dispersed
Clacu07g0876 Clacu-Chr7:21879881 Clacu01g0206 Clacu-Chr1:2017868 2.80E-17 dispersed
Clacu02g1943 Clacu-Chr2:32988310 Clacu01g0206 Clacu-Chr1:2017868 4.40E-80 transposed
Clacu02g2447 Clacu-Chr2:37414394 Clacu01g0206 Clacu-Chr1:2017868 1.00E-47 transposed
Clacu04g0680 Clacu-Chr4:20751540 Clacu01g0206 Clacu-Chr1:2017868 3.60E-173 transposed
Clacu06g1921 Clacu-Chr6:29519243 Clacu01g0206 Clacu-Chr1:2017868 4.80E-32 transposed
Clacu07g0586 Clacu-Chr7:8554046 Clacu01g0206 Clacu-Chr1:2017868 2.60E-49 transposed
Clacu07g1027 Clacu-Chr7:24692529 Clacu01g0206 Clacu-Chr1:2017868 2.30E-37 transposed
Clacu09g1043 Clacu-Chr9:9925501 Clacu01g0206 Clacu-Chr1:2017868 2.00E-78 transposed
Clacu02g2347 Clacu-Chr2:36546777 Clacu01g0206 Clacu-Chr1:2017868 1.10E-25 transposed
Clacu05g2284 Clacu-Chr5:31205251 Clacu01g0206 Clacu-Chr1:2017868 3.60E-24 transposed
Clacu01g0206 Clacu-Chr1:2017868 Clacu05g1017 Clacu-Chr5:8995384 1.50E-167 wgd
Clacu01g0206 Clacu-Chr1:2017868 Clacu07g1485 Clacu-Chr7:29434394 1.90E-50 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73216 PF07714 PK_Tyr_Ser-Thr 2.30E-34 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g0206 - - - 0.0