Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g0230 ATGGGGTCTATGCTCGGTGACTGCCGTCATATGACCCTCACAACTTCAGCCAATTCCGATCCTCTGATCCTTCAACTCCTTCCTGATAAAAATCTCTTCTATGCTGCAAATAGTGATGTTCTTGGTTTCTCTGATTTCTTGAGTGCTTTACTGTTTGCTTTCAGGGAAGATGATTCCTGCAATCTATCATCCATCCAACCCACAGTAGGACTCGTCCAGTTCCCCCACCAGATCAGGGCTACAAAAAGAACGCAAAAGCTTCAAAATTCTAGTAGAATGGAGCCAGCAGGTTTATTCCAATCCTCCATGAGATTTTTCTCCGATCAAGAACTCTGCTACGCCGATATCCTCACTCCTCAAGAGGTTGTGGCCAGAATTCAAGTAGCTGTCCTCAACTTCCTCAGAATTCTCAGCTCCCCCACTCCAGCCATCTCAAATCTTCCTCTGATTGATCGAAGATCGAGCAATAGCCGAGTGAATCAAGGAATTTTAATGGATGCTTCATGGATTTTCCTTTCGCACTCCTTTTGTACGAGGTCTTTGATGAGAGCCAATGCTGCCAAGGCCTTTGTTAGAGTGTGGAAGCTGATGGAGATGTGCTCTCAGATTCTGATTCAGGATAAGCGAGTGACGCAGAGGGAGCTCTTCTACAAGCTACTCTGTAATTCACCTGCTTATTTTCCGACTCAGTTGCATGTCAATAGGACAGTTCAAGATGTTGTAGCCTTACTTCGATGTAGCCGTTACAGCCTTGGCATTATGGCATCTAGCAGGGGACTTGTTGCCGGCCGTCTACTGTTGCAGGCACATTGCGCTGCCTTTCTTATTGATTTGGAGCCAGAGCAAGAAGTTGTGGACTGTACTGCCTGTGGGTCTTCTGGATATGCCATTTCAGGTGACTTGGACTTGTTGCAGAAGTTGACTCTGAAGACTGATGCTCGGTACGTAATTGTAATTGAAAAGCATGCAATATTCCAGCGGTTGGCAGAGGATCACGTTTTCAATCACATTCCCAGTATTCTTATCACAGCCAAAGGATATCCAGACATAGCCACAAGGTACTTTCTTCACAGAATTAGCAAAACGTTTCCTCTTCTGCCAATATTCGGCCTTGTTGATTGGAACCCTGCGGGATTGGCTATATTATGCACCTTCAAGTATGGAAGTATAGGGATGGGCTTGGAGGCGTACAGATATGCTTGCAATGTTAAATGGTTGGGAGTACGAGGCGACGATTTACAACTGATACCACAAGAATCTCTGGTTCCACTCAAGCCCCGGGACCTACAAATTGCCAAAAGCTTGATGTCCTCAGAAATATTACAGGAGAATTATCGACAAGAGCTGACCTTAATGGTTGAGAGAGGGCAAAAGGCTGAACTTGAAGCTTTATACCACAATGGATTTGATTATTTGGAGAACTGCTTCAGCTATAAAGATACCCCAGATTTTACTGTTACCGTGCCAAAGAAGTTGTCATACTGCGGTGTCACCGGAGTCTTCATCGTCACTTTCATCAAAGGAAGTCTTTCTCCCTTGAAAGTAGCAGCCAGCATTCTCATGGGGTCTATGCTCGGTGACCTGCCGTCATATGACCCTCACAACTTCAGCCAACTCCGACCCTCCGATCCTTCGACTCCTTCTATGGAAGTGGAACTTTGCTCCCCTGTTGGAACCAATGAATCAGACGGTGTTTTTGTTTTAATTCTCACTCTGTCTAGGTATTGTAATCTTAAGATGATTCCTGCAACCTATCATCCAACCCACAGTAGGACCCTTCCCCCACCAGATCAGGTTATAAATACAGAGGCCAAAAATATACTTATACGACACATTTATCAGCATACAGAAGAGAAGGTTAGTAAAAGAAAAATGTCAAGAACAAAGAGACCTGCAGCCGAGCATCCCGTGCCCGAGCACGGAAGCAAGCAACCAAGAGCATCTACTACCAACACTTCAAATTGA 1965 45.09 MGSMLGDCRHMTLTTSANSDPLILQLLPDKNLFYAANSDVLGFSDFLSALLFAFREDDSCNLSSIQPTVGLVQFPHQIRATKRTQKLQNSSRMEPAGLFQSSMRFFSDQELCYADILTPQEVVARIQVAVLNFLRILSSPTPAISNLPLIDRRSSNSRVNQGILMDASWIFLSHSFCTRSLMRANAAKAFVRVWKLMEMCSQILIQDKRVTQRELFYKLLCNSPAYFPTQLHVNRTVQDVVALLRCSRYSLGIMASSRGLVAGRLLLQAHCAAFLIDLEPEQEVVDCTACGSSGYAISGDLDLLQKLTLKTDARYVIVIEKHAIFQRLAEDHVFNHIPSILITAKGYPDIATRYFLHRISKTFPLLPIFGLVDWNPAGLAILCTFKYGSIGMGLEAYRYACNVKWLGVRGDDLQLIPQESLVPLKPRDLQIAKSLMSSEILQENYRQELTLMVERGQKAELEALYHNGFDYLENCFSYKDTPDFTVTVPKKLSYCGVTGVFIVTFIKGSLSPLKVAASILMGSMLGDLPSYDPHNFSQLRPSDPSTPSMEVELCSPVGTNESDGVFVLILTLSRYCNLKMIPATYHPTHSRTLPPPDQVINTEAKNILIRHIYQHTEEKVSKRKMSRTKRPAAEHPVPEHGSKQPRASTTNTSN 654
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2256022 2265240 + ClG42_01g0023000.10 Clacu01g0230 239614

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g0230 654 CDD TOPRIM_TopoIIB_SPO 314 471 IPR034136 -
Clacu01g0230 654 SUPERFAMILY DNA topoisomerase IV, alpha subunit 187 473 IPR036078 GO:0003677(InterPro)|GO:0005694(InterPro)
Clacu01g0230 654 PRINTS DNA topoisomerase VI subunit A family signature 340 361 IPR002815 GO:0003677(InterPro)|GO:0003918(InterPro)|GO:0005694(InterPro)
Clacu01g0230 654 PRINTS DNA topoisomerase VI subunit A family signature 230 247 IPR002815 GO:0003677(InterPro)|GO:0003918(InterPro)|GO:0005694(InterPro)
Clacu01g0230 654 PRINTS DNA topoisomerase VI subunit A family signature 316 333 IPR002815 GO:0003677(InterPro)|GO:0003918(InterPro)|GO:0005694(InterPro)
Clacu01g0230 654 PRINTS DNA topoisomerase VI subunit A family signature 248 263 IPR002815 GO:0003677(InterPro)|GO:0003918(InterPro)|GO:0005694(InterPro)
Clacu01g0230 654 PRINTS DNA topoisomerase VI subunit A family signature 373 389 IPR002815 GO:0003677(InterPro)|GO:0003918(InterPro)|GO:0005694(InterPro)
Clacu01g0230 654 Pfam Type IIB DNA topoisomerase 189 253 IPR013049 GO:0003677(InterPro)|GO:0003824(InterPro)|GO:0005524(InterPro)|GO:0005694(InterPro)|GO:0006259(InterPro)
Clacu01g0230 654 Pfam Det1 complexing ubiquitin ligase 523 548 IPR018276 -
Clacu01g0230 654 Pfam Det1 complexing ubiquitin ligase 579 618 IPR018276 -
Clacu01g0230 654 Pfam Topoisomerase 6 subunit A/Spo11, Toprim domain 315 474 IPR034136 -
Clacu01g0230 654 FunFam Meiotic recombination protein SPO11-2 112 256 - -
Clacu01g0230 654 Gene3D - 258 480 - -
Clacu01g0230 654 PANTHER MEIOTIC RECOMBINATION PROTEIN SPO11 118 487 IPR002815 GO:0000228(PANTHER)|GO:0000706(PANTHER)|GO:0003677(InterPro)|GO:0003677(PANTHER)|GO:0003918(InterPro)|GO:0005694(InterPro)|GO:0007131(PANTHER)|GO:0042138(PANTHER)
Clacu01g0230 654 MobiDBLite consensus disorder prediction 617 654 - -
Clacu01g0230 654 Gene3D - 110 256 IPR036388 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g0230 K10878 - - csv:101213596 670.618
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g42 . . . . . . . . . . Cma02g01426 Cma15g01253 . Car15g01130 . . Cpe05g00360 . . . . . . . . . . . . . . Cone8ag0277 Cone12ag0284 . . . Csa05g00241 Chy09g01261 . . . . . . Bpe11g00670 . . . Cmo02g01460 Cmo15g01318 . . . . . Cpe13g00132 Bhi12g00316 . . . . . . Cla01g00228 Cam01g0235 Cec01g0226 Cco01g0238 Clacu01g0230 Cmu01g0223 Cre09g2286 Lsi09g00218 . . Cme09g01799
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006132 0 6 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 6 1 1 39