Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g0239 ATGGCGACGGTGATTTCGGCCGTTGCAACCGCCGCGCCGTACCGGTTTAATCACCGGAGATTGTTTCAACGGCCTGCCGGAGCTCCGCCTCCACGGCTGGGTTTTCCGAAGCGTTTTCCATGGCGGTGTTTTGCGAAACAGAGCTCGAGAAGATTGCTGGCCATGAAGAAGAAGAAAAGTGAAGAAAATGAAGTGGTTAAGGAATTGAAGATGACTGTGCAGGAAAAAATGGCGACGAAGAAAGCGGAAAGAAATGCTTATTTGGTAGCAGCAATTGTTTCGAGCTTTGGGATCACTTCGATGGCCGCCATCGCTGTTTATTACAGATTCTCTTGGCAAATGGAGGGCAAAGAGTTTCCAATTTTGGAAATGTTCGGTACTTTTGCACTATCCATCGGCGCTGCTGTGGGAATGGAATTCTGGGCGAGATGGGCTCACAAAAAGCTATGGCATGCTTCGTTATGGGATATGCACGAGTCTCATCATAGGGCGAGGGTTGGAGCTTTTGAATTGAACGATGTGTTTGCAATTATAAACGCTGTCCCAGCCATTGCTCTTCTTTCTTTTGGCTTCTTCAATCAAGGCTTCTTTCCCGGCCTCTGTTTTGGTGCCGGTTTGGGAATTACGGTGTTTGGGATGGCCTACATGTTCGTCCACGATGGCCTCGTGCACCGTCGTTTCCCTGTGGGTCCTATAGCCGCTGTCCCCTACTTACGACGTGTCGCTGCTGCCCATCATATCCATCACACGGATAAATTCGACGGAGTTCCGTATGGTTTGTTTTTAGGACCCAAGGAATTGGAGGAAGTGGATGGCGAGGAAGAGCTGCAGAAGGAAATTAAAAAGAGAAGCAAGTGTCTAGGTCTTGGGCCCAAGCCCAACGGGCCATTTTGGGTGGGCCGATTAAGAATCAAGCCCTCCTATATTTTCAGCCACGTTACTTGTTCCACGAAAGTTCCCGAAAGTTCCCACTCCCTAATTCCAAAACCAGCAACTTCGATTCGCGCCAATCTCAACACTGGACCGGCGACGATTGCAGAATATCGGAGTACGGACACTCTCATCTCGCTTTTCTCATATCTTCTACAATTCACATCTGATATGCGTGGTGCAGCTGCCTTATTGACTGTAAAGAACAAATCTAAACTGATCCATCCTCTGAAAGGATCATGGGGTAGTCTGGCCTCATCAGTACAAAGGCAAGGAATGAAGAATGATTCTGAGGGAGAGTCTGTGGTTACCAAAGAGAAAGCAGACCCAATTGCAGCGTTCAGTAGGCCTCCACCACTCCCTCCCCTTCTTGGTCCATTGGCTGTTTTCTCATTGTTAGAAACGTATTTGAGTCGTGATGGAAATGATGACTAG 1365 48.35 MATVISAVATAAPYRFNHRRLFQRPAGAPPPRLGFPKRFPWRCFAKQSSRRLLAMKKKKSEENEVVKELKMTVQEKMATKKAERNAYLVAAIVSSFGITSMAAIAVYYRFSWQMEGKEFPILEMFGTFALSIGAAVGMEFWARWAHKKLWHASLWDMHESHHRARVGAFELNDVFAIINAVPAIALLSFGFFNQGFFPGLCFGAGLGITVFGMAYMFVHDGLVHRRFPVGPIAAVPYLRRVAAAHHIHHTDKFDGVPYGLFLGPKELEEVDGEEELQKEIKKRSKCLGLGPKPNGPFWVGRLRIKPSYIFSHVTCSTKVPESSHSLIPKPATSIRANLNTGPATIAEYRSTDTLISLFSYLLQFTSDMRGAAALLTVKNKSKLIHPLKGSWGSLASSVQRQGMKNDSEGESVVTKEKADPIAAFSRPPPLPPLLGPLAVFSLLETYLSRDGNDD 454
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2338874 2346612 + ClG42_01g0023900.10 Clacu01g0239 239623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g0239 454 Pfam Fatty acid hydroxylase 134 261 IPR006694 GO:0005506(InterPro)|GO:0008610(InterPro)|GO:0016491(InterPro)
Clacu01g0239 454 PANTHER BETA-CAROTENE 3-HYDROXYLASE 1, CHLOROPLASTIC 54 285 IPR045019 GO:0009507(PANTHER)|GO:0010291(PANTHER)|GO:0016119(PANTHER)|GO:0016123(PANTHER)|GO:0016491(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0239 Clacu-Chr1:2338874 Clacu05g0985 Clacu-Chr5:8754234 2.40E-98 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g0239 K15746 - csv:101214325 466.848