Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g0243 ATGGTAGTTGGAGGAGGGTTTTTTTACAATTCCAATTCAAATTCAAACAACATCCCAAATCAGTTCACAAACCAGATCCAAACCGGGTTCGGTTCCACCACCGAACACGCGACGGAGATGTTCAATGAGTCGAGTGGTGGCGGTGGTGGTGACGACGATGAGTCGTTTCATCAGAATATGATGGTGGTTGGACCGTGGGGGACGACAACGACGACGATGGCGACGACGGATTCTTCTTTAAGATGTGTGTTTCCATGTGAACCAAATGAAAGACCAAGCCAAGGCCTTTCTTTGTCTCTTAGTTCTTCTAATCCTTCTTCTATTGGCTTACAATCTTTTGAACTAAGACAACAACACCAATCATCTTTCCCCATTTTTCACCTTAGAAACTCAAGGTTCTTAATCCCAACTCAAGAGCTTCTTTATGAGTTTTGTAGCCTTGGAATCACCAATAACATCAATCATTCTTCTTCCTCACCAAAACAAAAACATGGCTCTTCTTCTACCACTTTCTCTCTTCAATCACTTGATTTCATGGACTTGCAAAAGAGGAAAACTAAGCTTTTCTCCATGCTTGAAGAGGTTGAAAGAAGGTATAGGCATTATTGCGAGCAAATGAAGGCGGTGGTGGCGTCATTCGAAGCGGTGGCGGGGAATGGGGCGGCGAGGGTGTACTCGGCGTTAGCGTCGAAAGCGATGTCGAGGCATTTTAGGAGCCTAAAAGATGGGATTGTGGGGCAAATTCAAGCCACAAGAAAGGCAATGGGAGAAAAGGATCCAATTGCACCTGGTACAACAAGAGGAGAAACACCAAGGCTTAGAGTGATTGATCAAGCTTTAAGGCAACAAAGAGCTTTCCATCAAATCAGCATCATGGAAAGCCATCCATGGCGCCCTCAACGTGGCCTCCCCGAGCGTTCTGTTTCGGTTCTTCGTGCTTGGCTTTTCGAACACTTTCTTCACCCGTACCCTAGCGATGTGGATAAACATATTTTAGCTCGCCAAACTGGTCTATCCAGAAGCCAGGTGTCAAATTGGTTCATTAATGCAAGGGTGAGGCTATGGAAGCCAATGGTAGAAGAGATGTATTTGGAAGAAACAAAGGAACAAGAGGAAGAGATTGACAACAGTTTCAACAACATGAACAACAATGCCAACAACTCTTTTGATGGGGTGGGGGATTTCGACGACGAAATCGACGGTCATCGATCAATCGTGGCACGACTCGAGGATCAGAAACCAACTCCGGATCAACTCCTAAGAATAGACTCGGAATGTCTCTCTTCAATCATCTCTAATAACACGGAGAAGAATGACTCAAGAACGATGAAAACCTTGCAAAACCACCACCTCCACGAAAACCACAACCACACCTTCGGACGGGTTGTGAGTGACGCCTTCGGCACGGTAGAGCTCGACTTCTCGTCCTACAACCACCATACCGGTAGTGGTGGAGTTACGTACCCTAACAACAACAATAACAACAACAACAATCAACATTTCAACAACGGCAATGGTGGGGGCGTGTCGTTGACATTAGGGTTACAGCAGCACGCAGCAGCTGGGGGGAATGGCAACGGAGGGGTGAGCATCGCCTTCTCTCCGGCAGCAGCGGCGGCACAAAGCTCCCTTTTCTTCACAAGAGATCACATGGAAGAATGCCAACCAGTTCAGTATTCCCTTTTAGATGGAGAAACTCAGAATCTTCCATACAGAAATTTGATGGGTGCTCAATTGCTTCATGATTTGGCTGGATAA 1758 46.25 MVVGGGFFYNSNSNSNNIPNQFTNQIQTGFGSTTEHATEMFNESSGGGGGDDDESFHQNMMVVGPWGTTTTTMATTDSSLRCVFPCEPNERPSQGLSLSLSSSNPSSIGLQSFELRQQHQSSFPIFHLRNSRFLIPTQELLYEFCSLGITNNINHSSSSPKQKHGSSSTTFSLQSLDFMDLQKRKTKLFSMLEEVERRYRHYCEQMKAVVASFEAVAGNGAARVYSALASKAMSRHFRSLKDGIVGQIQATRKAMGEKDPIAPGTTRGETPRLRVIDQALRQQRAFHQISIMESHPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPMVEEMYLEETKEQEEEIDNSFNNMNNNANNSFDGVGDFDDEIDGHRSIVARLEDQKPTPDQLLRIDSECLSSIISNNTEKNDSRTMKTLQNHHLHENHNHTFGRVVSDAFGTVELDFSSYNHHTGSGGVTYPNNNNNNNNNQHFNNGNGGGVSLTLGLQQHAAAGGNGNGGVSIAFSPAAAAAQSSLFFTRDHMEECQPVQYSLLDGETQNLPYRNLMGAQLLHDLAG 585
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2363460 2366496 - ClG42_01g0024300.10 Clacu01g0243 239627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g0243 585 Coils Coil 364 384 - -
Clacu01g0243 585 CDD homeodomain 297 358 IPR001356 GO:0003677(InterPro)
Clacu01g0243 585 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 81 385 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Clacu01g0243 585 ProSiteProfiles 'Homeobox' domain profile. 294 357 IPR001356 GO:0003677(InterPro)
Clacu01g0243 585 Pfam Homeobox KN domain 314 353 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Clacu01g0243 585 SMART prehox3 122 246 IPR006563 -
Clacu01g0243 585 SMART HOX_1 297 361 IPR001356 GO:0003677(InterPro)
Clacu01g0243 585 FunFam BEL1-like homeodomain protein 4 300 362 - -
Clacu01g0243 585 Gene3D - 300 362 - -
Clacu01g0243 585 SUPERFAMILY Homeodomain-like 298 363 IPR009057 -
Clacu01g0243 585 Pfam Associated with HOX 128 244 IPR006563 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0243 Clacu-Chr1:2363460 Clacu02g1333 Clacu-Chr2:26379173 7.90E-78 dispersed
Clacu01g0243 Clacu-Chr1:2363460 Clacu10g1809 Clacu-Chr10:31768159 5.70E-68 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46943 PF07526 POX 5.70E-41 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g0243 - - - 0.0