Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Clacu01g0247 | ATGGGCTTCCCTGCAAGCTACACTGAGCTTCTTCTCCCTAAGCTCGTCATCCACGTATTCTCCTTCCTCGGCTTCCTCCGGAAGCTTATCTCCCTCCTCTTCCGCCTCCTTGGCCTCCAAGATTTCCTCGAACCCGACATTCCTTGGCCCAATCACCCCGATTCCTTCCCCACCGGACCCTTCGCCGACCTCGATCCTCTCTCCGCTGCCGTTCTCCGTGAGATTCTCCCCGTCATCAAGTTTTCCGAACTTCTGGATCCGCCGGAGAGCTGCGCTGTGTGCCTCTACGAGTTCGAGGCCGAAGATGAGATCCGCCGCCTTGCTAACTGCCGTCACATCTTCCACCGTGGATGCCTCGATCGGTGGATCGGTTACGGTCAGAGAACTTGCCCGCTCTGCCGGACGGTGTTTATTCCGCCCGATTTGCGGAGTGGTGGTTGTAATTTTGACGATAGGCTTTGGGAGGATTCGGAAATCTTTGAAGCTCTCCTCAGTGATTCTTCATCTTCAAGTCTTCTCGCTGCTGGTTTGTAG | 534 | 55.62 | MGFPASYTELLLPKLVIHVFSFLGFLRKLISLLFRLLGLQDFLEPDIPWPNHPDSFPTGPFADLDPLSAAVLREILPVIKFSELLDPPESCAVCLYEFEAEDEIRRLANCRHIFHRGCLDRWIGYGQRTCPLCRTVFIPPDLRSGGCNFDDRLWEDSEIFEALLSDSSSSSLLAAGL | 177 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 2419850 | 2420383 | + | ClG42_01g0024700.10 | Clacu01g0247 | 239631 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Clacu01g0247 | 177 | PANTHER | RING ZINC FINGER PROTEIN-RELATED | 7 | 141 | - | - | |
| Clacu01g0247 | 177 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 85 | 137 | IPR013083 | - | |
| Clacu01g0247 | 177 | Pfam | Ring finger domain | 90 | 134 | IPR001841 | - | |
| Clacu01g0247 | 177 | ProSiteProfiles | Zinc finger RING-type profile. | 91 | 134 | IPR001841 | - | |
| Clacu01g0247 | 177 | SMART | ring_2 | 91 | 133 | IPR001841 | - | |
| Clacu01g0247 | 177 | SUPERFAMILY | RING/U-box | 72 | 140 | - | - | |
| Clacu01g0247 | 177 | SMART | ringv_2 | 90 | 134 | IPR011016 | GO:0008270(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Clacu01g0247 | Clacu-Chr1:2419850 | Clacu01g2097 | Clacu-Chr1:32669016 | 5.10E-12 | dispersed | |
| Clacu01g0247 | Clacu-Chr1:2419850 | Clacu05g0166 | Clacu-Chr5:1548461 | 1.20E-34 | wgd | |
| Clacu01g0247 | Clacu-Chr1:2419850 | Clacu06g0344 | Clacu-Chr6:4192240 | 8.00E-42 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Clacu01g0247 | K16281 | - | csv:101215533 | 300.056 |