Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g0259 ATGGAGGGGAAAGAAGAGGACGTGAAACTAGGAGCAAACAAGTTCTCAGAAAGGCAGCCAATCGGCACATCGGCGCAGACGGACAAGGACTATAAAGAGCCACCGCCGGCGCCGCTGTACGAGCCCGGCGAACTGACTTCATGGTCATTTTACAGAGCCGGAATCGCGGAGTTTGTGGCCACTTTCTTGTTCCTCTACATCACCATCTTGACAGTGATGGGAGTCAGCCGAGCTCCGTCGAAATGCTCCACCGTTGGCATTCAGGGTATCGCTTGGGCCTTCGGCGGCATGATCTTCGCCCTCGTCTACTGCACCGCCGGCATCTCCGGTGGACACATTAATCCGGCGGTGACGTTCGGGCTTTTCCTGGCCAGGAAATTGTCCCTCACCAGAGCCATATTCTACATCGTAATGCAGTGCCTTGGTGCCATCTGCGGCGCGGGCGTCGTGAAGGGCTTCGAGGGCTCCACCTACGTGCAGAAGCTCGGTGGTGCAAACTTCGTCGCCTCTGGCTACACCAAGGGCAGCGGTCTCGGTGCTGAGATTGTCGGTACCTTCGTTCTCGTCTACACCGTCTTCTCCGCCACCGATGCCAAGAGAAATGCCAGAGATTCTCACGTCCCTATTTTGGCTCCTCTTCCCATTGGGTTTGCAGTGTTTTTGGTTCATTTGGCCACCATTCCCATTACCGGCACCGGCATTAATCCGGCCAGGAGTCTCGGAGCTGCAATCATCTACAACAGGCAACACGCTTGGGATGACCACTGGATCTTCTGGGTGGGACCTTTCATTGGAGCTGCTTTGGCTGCTATTTACCACCAAATCATCATCAGAGCTATTCCATTCAAGGCCAGGGCTTGA 861 55.28 MEGKEEDVKLGANKFSERQPIGTSAQTDKDYKEPPPAPLYEPGELTSWSFYRAGIAEFVATFLFLYITILTVMGVSRAPSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAIFYIVMQCLGAICGAGVVKGFEGSTYVQKLGGANFVASGYTKGSGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNRQHAWDDHWIFWVGPFIGAALAAIYHQIIIRAIPFKARA 286
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2530915 2533470 - ClG42_01g0025900.10 Clacu01g0259 239643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g0259 286 Gene3D Glycerol uptake facilitator protein. 37 284 IPR023271 -
Clacu01g0259 286 FunFam Probable aquaporin PIP1-2 37 286 - -
Clacu01g0259 286 Pfam Major intrinsic protein 44 273 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu01g0259 286 MobiDBLite consensus disorder prediction 1 36 - -
Clacu01g0259 286 NCBIfam MIP family channel protein 56 272 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu01g0259 286 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 5 282 IPR034294 GO:0005773(PANTHER)|GO:0005886(PANTHER)|GO:0009414(PANTHER)|GO:0009506(PANTHER)|GO:0015250(PANTHER)
Clacu01g0259 286 PRINTS Major intrinsic protein family signature 256 276 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu01g0259 286 PRINTS Major intrinsic protein family signature 52 71 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu01g0259 286 PRINTS Major intrinsic protein family signature 94 118 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu01g0259 286 PRINTS Major intrinsic protein family signature 216 238 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu01g0259 286 PRINTS Major intrinsic protein family signature 180 198 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu01g0259 286 PRINTS Major intrinsic protein family signature 131 150 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu01g0259 286 SUPERFAMILY Aquaporin-like 44 278 IPR023271 -
Clacu01g0259 286 CDD MIP 52 276 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu01g0259 286 ProSitePatterns MIP family signature. 112 120 IPR022357 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0259 Clacu-Chr1:2530915 Clacu07g0405 Clacu-Chr7:4625997 1.20E-140 dispersed
Clacu01g0259 Clacu-Chr1:2530915 Clacu07g0403 Clacu-Chr7:4619390 1.80E-139 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g0259 K09872 - csv:101217440 560.451