Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g0260 ATGGCTTCAACTTTCACTTTCCGTCCATTTCCTCTCATTCTCTCTCCTCGCCCCAATTTTCCTTCTCTAAGACCTCAATTTCACCGCCAATATCTTCCCACCATTCGAATTCTTCGACCTTCAATTCCTTCCGCCATTGGTCCGGACGGCAAATTCTATCCGGACCCGGCCGACGACGACCCGCCGGAAGCCCCGGAAGATTCTGGCCATGGAGTTTCAAAGTTTCAGCAGATATACCGCCAGGCGGCTCGTGCGAGGAAGCTTCAGGAGGAGGATTTCAAGAAGCATCAGTCTACATATCTTTCGGCCATTGCTGACGTTGAGGATGCTCCTGAGAATGCAGAGTATTTGAATTCGGAGAGCTCAGGCGATGATTTGTTCGGTGAAATTGACAAAGCTATTGCTCTGAAGCGGAAGGAGTTCGTGAAGCAGGGACTTCTTAAGCCTAACCCGAAGAAAGAAAAGGCGATTGAGAAAGATGATCTTGAGGGCATTGATGAGTTGGAGACTGAGGAGGTCGCGGACTTGGAGGAGATTAACGAACTTCGGGGGCTTACAGTGATTTCGGAGGACGAGGACGAGGATGAAAATGGGCCTAGGAATTTGGATGACAATGTAAGTGAATTAGGTGGTCAGGATGAACTATCTTCTTTTAATTCTTTTGATATGGATTTTGATAGCTATGGAAAAGTCAAGGCTAGGATTGTGGAACCCAAGTTCAAAATGACTTTAGCCGAGCTCTTGGATGAAAGTAAGGTCGTTCCAGTTTCTGTTTTTGGCAATTTAGAGATAGAAATTACTGGCATTCAACATGATTCGAGGATGGTTAGCGCGGGTGACTTGTTTGTGTGCTGTGTTGGGAGGGAAACTGATGGACACTTGTATTTAACTGAGGCGGATAAGAGGGGTGCAGTGGCTGTGGTGGCTAGCAAGGAGATAGACATAGAAGAAACTTTGGGCTGTAAAGCTTTGGTAATGGTGGAGGATACTAACTCTGTTCTTCCTGCATTGGCTGCTTCTTTTTACAGGAACCCTTCAAAGAATATGGCCGTGATAGGAATAACTGGGACAGACGGTAAAACGAGCACTTCCTACTTGATAAAGGGGATGTATGAGGCAATGGGGTTGAGAACTGGGTTGTTAGGTACAGTGGCCTATTATTTACATGGGGACAATAAGTTGGAGTCGCCAAGTACAACCCCGGATGCTATTTTGGTCCAAAACTTAATGGCAAAGATGCTTCATAATGGAACTGAAGCGGTTGTCATGGAGGTTTCATCCGATGGACTTGCTCGTGGCAGGTGTGATGAAGTTGATTTTGATATAGCGGTTTTCACAAATTTGACTAGAGACCATTTGGATTTTGAAGGGTCTGAAGAGGAGTATAGGGATGCCAAAGCCAAGCTATTTAAAAGGATGGTGGATCCAGACCGACACCGAAAAGTTATTAACATCGATGATCCCAGTGCACCATTCTTCATAGATCAAGGAAACCCAGATGTGCCTGTTGTCACCTTTGCAATGGAAAACAAAAATGCTGATGTCCACCCCCTGAAATATGAATTGTCATTATTTGAGACACAGGTTTTGGTTCACACTCCCCAGGGTATATTGGAGATATCATCGGGGTTGCTTGGAAAGCACAATATATACAATATTCTTGCAGCAGTGGCAGTTGGGATCGCAGTTGGAGCACCATTAGAGGATATTGTTAGAGGTGTTGAAGAGGTTGATGCTGTTCCTGGGAGATTCGAGCTGATTGATGAGGAGCAGGCATTTGGTGTAATTGTTGATCACGCTCATACTCCTGATGGTCTATCCCGGCTGCTCGATTCTGTTAGGGAGCTTGGCCCGAGGCGGATTATCACTGTTTTTGGATGCTGTGGTGAGCATGACAGGGGGAAAAGACCCATGATGACAAAGATTGCAACTGATAAAAGCGATGTTACTATTCTGACATCTGATAATCCAAGGAATGAAGATCCATTGGACATCTTGGATGATATGTTGGCTGGTATAGGCTGGACTATGCAGGATTACTTGAAACATGGAGAAAATGATTACTACCCGCCTCTCTCAAATGGTCATAGAATTTTCCTGCATGATATCAGACGTGTGGCTGTACGTGCTGCTGTTGCAATGGGCGAGGAAGGCGACGTGGTTGTGAGTTACTTAGCGTTCTTGATTGAGCCAAAAGATAGTGGCAGACTTCAGATGGAATTTCACAAGTTTCTCAATATAAAGCAGATAGATAAACTTCAGCTAGCATTGAATATAAAGAAATGTATTGTTAACCCGAGAGATGAGAGCAAAGAGGGTGGAAGAGGTTCCCAACTAGCCAATAGGGTGGTTGCCGGCAAGGGACATGAAACATATCAAATTGAAGGTGATAAAACAGAGTTTTTTGATGATAGAGAAGAATGCAGAGAAGCACTGCAATATGTTGATGAACTTCACCAAGCTGGAATTGACACAAGTGAATTTCCATGGCGGAACATTTTCATGACTGAAAGAAGAGTAGAAGTGTTTCTCTGTCATGGTCGTTCACAACGGTTCAGGAACTATAAAATGCACACAATTAAGGCAAATACTAGTCATTTTGTTTCTAATTGTGCTCTTTTGCTTGTTTTCTTTTGGTATACAGTTGCTTTGGTCGCCTTGGTTGGATACGCAGCAACGATTGGTGCTGAAGTTGGAGATGGAAGTGAAGAATCCGAATCATTGCTTGTAAATCCCTTGTTGTCTGTGTTAATGGTTGAATCTATGGATTTGCAGCAGAGGCATTTTCTTGGTGGGTTTGCCATATCCGCTCTAGTTTTGCTGCTGATTTTTCCTTGTCACGTGACTGCTGGGGATATAGTTCACCATGACGATTTGACTCCTAAAAAGCCTGGCTGTGAGAACGACTTCATTCTGGTTAAAGTTCAAACTTGGGTTGATGGCAAAGAAGCTAGTGAATTTGTCGGTGTCGGTGCAAGATTTGGTGCTACAATCGTGTCAAAGGAGAAAAATGCAAACCAAACACGCCTTGTTCTTGCAAATCCCCGTGATTGTTGCAGCGTGCCAAAGAACAAGCTTTCTGGAGATATAATCATGGTAGATCGTGGTCACTGCAAATTTACTACAAAAGCAAATATTGCAGAAGCTGCAGGTGCTTCAGCAATACTCATAGTAAATAACCAAAAAGAGCTTTACAAGATGGTTTGTGATCCTGATGAGACTGATCTTGATATACATATACCTGCTGTCATGCTCCCACAAGATGCTGGAACAAGCTTGGAGAAGATGCTTATAAGTAATTCATCAGTGTCTGTTCAGCTCTACTCTCCACTACGACCACCAGTTGACATAGCTGAAGTATTCTTATGGTTGATGGCTGTCAGTACGATCTTGTGCTCATCTTTTTGGTCTGCCTGGAGTGCTAGGGAAGCAGCCATTGAGCAGGACAAGCTGCTAAAGGATGGTGCAGATGATATTCAAAATGCTGAAGACATGGGCAGCCCTGGTGTTGTATATATTAACATGGCATCAGCAGTCTTGTTTGTTGTCGTTGCTTCGTGCTTTTTGATTTTGCTTTACAAACTCATGTCGTACTGGTTCATTGAGCTTTTGGTAGTTCTTTTCTGCATAGGAGGTGCAGAGGGTTTGCAAACTTGTTTGGTTGCGTTATTGTCAAGATGCTTTAAGCAAGTTGGAGAATCATACATCAAGGTGCCATGCTTTGGAGCTGTTTCATACCTCACTGTTGCTGTTTCTCCATTCTGCATAGCATTTGCTGTTGTTTGGGCTGTTTATCGGAATGTGTCATTTGCCTGGATCGGTCAAGACATACTTGGAATTGCACTGATAATTACAGTTCTTCAAATAGTTCGTATACCAAATCTCAAGGTTGGAACAGTGCTACTCAGTTGTGCCTTCCTCTATGATATCTTTTGGGTCTTTGTTTCTAAGAAGTTGTTCAATGAAAGTGTGATGATTGTGGTGGCTCGTGGCGATAAAAGCGGAGAGGACGGAATCCCAATGTTGCTAAAGATTCCTCGCATGTTTGATCCCTGGGGTGGTTATAGCATTATTGGATTTGGTGACATCCTTTTACCTGGACTCGTAGTAGCATTTTCTCTCAGGTATGACTGGTTGGCAAATAAGAGCCTCCGGGTCGGTTACTTCTTACCAGCAATGCTTGCTTATGGGTCAGGTCTTCTGATTACTTATGTGGCTTTGAACCTGATGGATGGCCATGGCCAGCCCGCACTGCTTTACATCGTCCCGTTCACTCTCGGAACCCTTTTGACACTGGGGAAGAAGAGAGGAGATTTGGGGATTCTGTGGACAAAAGGAGAACCAGAAAGGGTCTGCCCTCATGCTCATCTTCTCATCAATGACGATTTAAATGAAGAAAAATGA 4404 43.89 MASTFTFRPFPLILSPRPNFPSLRPQFHRQYLPTIRILRPSIPSAIGPDGKFYPDPADDDPPEAPEDSGHGVSKFQQIYRQAARARKLQEEDFKKHQSTYLSAIADVEDAPENAEYLNSESSGDDLFGEIDKAIALKRKEFVKQGLLKPNPKKEKAIEKDDLEGIDELETEEVADLEEINELRGLTVISEDEDEDENGPRNLDDNVSELGGQDELSSFNSFDMDFDSYGKVKARIVEPKFKMTLAELLDESKVVPVSVFGNLEIEITGIQHDSRMVSAGDLFVCCVGRETDGHLYLTEADKRGAVAVVASKEIDIEETLGCKALVMVEDTNSVLPALAASFYRNPSKNMAVIGITGTDGKTSTSYLIKGMYEAMGLRTGLLGTVAYYLHGDNKLESPSTTPDAILVQNLMAKMLHNGTEAVVMEVSSDGLARGRCDEVDFDIAVFTNLTRDHLDFEGSEEEYRDAKAKLFKRMVDPDRHRKVINIDDPSAPFFIDQGNPDVPVVTFAMENKNADVHPLKYELSLFETQVLVHTPQGILEISSGLLGKHNIYNILAAVAVGIAVGAPLEDIVRGVEEVDAVPGRFELIDEEQAFGVIVDHAHTPDGLSRLLDSVRELGPRRIITVFGCCGEHDRGKRPMMTKIATDKSDVTILTSDNPRNEDPLDILDDMLAGIGWTMQDYLKHGENDYYPPLSNGHRIFLHDIRRVAVRAAVAMGEEGDVVVSYLAFLIEPKDSGRLQMEFHKFLNIKQIDKLQLALNIKKCIVNPRDESKEGGRGSQLANRVVAGKGHETYQIEGDKTEFFDDREECREALQYVDELHQAGIDTSEFPWRNIFMTERRVEVFLCHGRSQRFRNYKMHTIKANTSHFVSNCALLLVFFWYTVALVALVGYAATIGAEVGDGSEESESLLVNPLLSVLMVESMDLQQRHFLGGFAISALVLLLIFPCHVTAGDIVHHDDLTPKKPGCENDFILVKVQTWVDGKEASEFVGVGARFGATIVSKEKNANQTRLVLANPRDCCSVPKNKLSGDIIMVDRGHCKFTTKANIAEAAGASAILIVNNQKELYKMVCDPDETDLDIHIPAVMLPQDAGTSLEKMLISNSSVSVQLYSPLRPPVDIAEVFLWLMAVSTILCSSFWSAWSAREAAIEQDKLLKDGADDIQNAEDMGSPGVVYINMASAVLFVVVASCFLILLYKLMSYWFIELLVVLFCIGGAEGLQTCLVALLSRCFKQVGESYIKVPCFGAVSYLTVAVSPFCIAFAVVWAVYRNVSFAWIGQDILGIALIITVLQIVRIPNLKVGTVLLSCAFLYDIFWVFVSKKLFNESVMIVVARGDKSGEDGIPMLLKIPRMFDPWGGYSIIGFGDILLPGLVVAFSLRYDWLANKSLRVGYFLPAMLAYGSGLLITYVALNLMDGHGQPALLYIVPFTLGTLLTLGKKRGDLGILWTKGEPERVCPHAHLLINDDLNEEK 1467
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2542867 2555447 - ClG42_01g0026000.10 Clacu01g0260 239644

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g0260 1467 SUPERFAMILY MurD-like peptide ligases, catalytic domain 345 577 IPR036565 GO:0005524(InterPro)|GO:0009058(InterPro)
Clacu01g0260 1467 Pfam Mur ligase, glutamate ligase domain 582 722 IPR004101 GO:0009058(InterPro)|GO:0016881(InterPro)
Clacu01g0260 1467 Gene3D - 976 1110 - -
Clacu01g0260 1467 MobiDBLite consensus disorder prediction 48 72 - -
Clacu01g0260 1467 SUPERFAMILY PA domain 1016 1065 IPR046450 -
Clacu01g0260 1467 SUPERFAMILY MurE/MurF N-terminal domain 242 345 IPR035911 -
Clacu01g0260 1467 MobiDBLite consensus disorder prediction 185 206 - -
Clacu01g0260 1467 NCBIfam UDP-N-acetylmuramyl-tripeptide synthetase 264 722 IPR005761 GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0008360(InterPro)|GO:0016881(InterPro)|GO:0051301(InterPro)
Clacu01g0260 1467 SMART psh_8 1169 1436 IPR006639 GO:0016020(InterPro)|GO:0042500(InterPro)
Clacu01g0260 1467 Gene3D - 782 823 IPR036615 GO:0009058(InterPro)|GO:0016881(InterPro)
Clacu01g0260 1467 Pfam Mur ligase middle domain 354 559 IPR013221 GO:0005524(InterPro)|GO:0009058(InterPro)|GO:0016881(InterPro)
Clacu01g0260 1467 Hamap UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [murE]. 242 812 IPR005761 GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0008360(InterPro)|GO:0016881(InterPro)|GO:0051301(InterPro)
Clacu01g0260 1467 Pfam PA domain 1009 1093 IPR003137 -
Clacu01g0260 1467 CDD PA_GO-like 969 1107 - -
Clacu01g0260 1467 MobiDBLite consensus disorder prediction 53 67 - -
Clacu01g0260 1467 Pfam Mur ligase family, catalytic domain 265 342 IPR000713 GO:0009058(InterPro)|GO:0016881(InterPro)
Clacu01g0260 1467 FunFam Signal peptide peptidase-like 3 972 1111 - -
Clacu01g0260 1467 SUPERFAMILY MurD-like peptide ligases, peptide-binding domain 580 722 IPR036615 GO:0009058(InterPro)|GO:0016881(InterPro)
Clacu01g0260 1467 Gene3D - 345 583 IPR036565 GO:0005524(InterPro)|GO:0009058(InterPro)
Clacu01g0260 1467 Pfam Signal peptide peptidase 1170 1447 IPR007369 GO:0016020(InterPro)|GO:0042500(InterPro)
Clacu01g0260 1467 Gene3D - 243 343 - -
Clacu01g0260 1467 Gene3D - 585 724 IPR036615 GO:0009058(InterPro)|GO:0016881(InterPro)
Clacu01g0260 1467 PANTHER MUR LIGASE FAMILY MEMBER 226 722 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g0260 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0260 Clacu-Chr1:2542867 Clacu11g1588 Clacu-Chr11:27029764 3.60E-18 dispersed
Clacu08g0523 Clacu-Chr8:10273392 Clacu01g0260 Clacu-Chr1:2542867 2.70E-131 transposed
Clacu01g0260 Clacu-Chr1:2542867 Clacu05g0963 Clacu-Chr5:8506793 2.10E-18 wgd
Clacu01g0260 Clacu-Chr1:2542867 Clacu06g0364 Clacu-Chr6:4355719 1.80E-227 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g313 . . . . . . . Bma14g00701 . . Cma02g01444 . Car02g01212 . . . Cpe05g00342 . . . . . . . . . . . . . . Cone8ag0299 Cone12ag0305 . . . Csa05g00273 Chy09g01235 . Blo03g00340 . Bda07g00481 . . . . . . Cmo02g01481 . . . . . . . Bhi12g00272 . . . Hepe06g1538 . Lcy12g1641 Cla01g00256 Cam01g0262 Cec01g0254 Cco01g0267 Clacu01g0260 Cmu01g0249 Cre09g2260 Lsi09g00249 . . Cme09g01769
Vvi16g705 . . Bda05g00079 . Bpe03g00282 . Bma10g01228 . . Cmo18g01275 . . . . . . Cpe14g00104 Bhi01g01307 Tan01g0241 . . Hepe07g0148 . . Cla01g00256 Cam01g0262 Cec01g0254 Cco01g0267 Clacu01g0260 Cmu01g0249 Cre09g2260 Cone1ag1162 Cone5ag0872 . . . . . Cme06g01009 Blo07g00402 . . . . . . . . . . . Cma18g01252 Car16g00109 Car18g01159 Cpe09g00085 . . . . . . . . Cla05g00889 Cam05g0976 Cec05g0980 Cco05g0979 Clacu05g0963 Cmu05g0920 Cre05g1005 . Csa03g01721 Chy06g00953 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006982 1 3 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 2 1 37