Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g0278 ATGGATGGGAGGGAAGGCATGGCATTGTCTGGTGGCTCTGCTTCTTATTACATACATAGGGGAGGAGGAGTTGGTGGCTCTGGATCAGGGCTGCCTACGGCTGGATCACATGCCTCCCCTGTATTCCGGCCGATGGCTAACCAGGGTGTTTTGTCTCACTCAAATCTCAGAGGCAACTCAGTTGGATCAACATATGCTGTTGAACCATCACATTCAAATTATCTTCGTGGGATGGGTATCAATGTCTCAGCTGGAGTGAACTCTAGTGAACCTGTAAAGAAGAAGAGAGGGAGACCCCGGAAATATGCCCCAGATGGGCAGGTCTCATTGGGTTTGTCTCCCATGTCTGCTGGTTCTAAGCTCACTCCGGGTTCGAATTCGTCAACCCCCAGACGACGACGAGGGCGGCCACCCGGTTCTGGAAGGAAACAACAATTAGCTCTCCTTGGTGATTGGATGAACAATTCAGCTGGACTAGCCTTTGCTCCACATGTTATTCACGTTGGAGCTGGAGAAGACATTGTAGCAAAAGTGTTGTCATTCGCACAGCAGAGGCCAAGGGCTCTTTGCATATTGTCTGGCAATGGGACTGTTTCTTCTGTAACACTACGTCAGCCTGCATCCACTGGCGTGAGCGTCACTTATGAGGGTCATTTCCAGATATTGTGCTTATCTGGTTCTTACTTGGTGGCTGAAGACGGTAGTCCTCGAAGTAGGACAGGAGGTATTAGTGTTTCTCTCTCTAGTCCTGATGGTCATGTCATTGGTGGCGGTGTTGCCGTTCTTATGGCAGCTGGCCCTGTTCAGGTAGTTGTATGTAGTTTTGTTTATGGTGCAAAGATAAAAAACAAGCAGGTGGCTGGTTCGAAAAACAATGATGCTTCTGGAAATGAGCACCACGACAATTTGGTTTCCCCCACGAGTGCCCCATCTGCCCAAACCTACAATCCATCTCCAATTGGTGTTTGGCCTGGTTCCCGTTCAGTCGATATTCATGCTAACATATGGTATGAGACTTCATTTCAAGTTTCTCAAGTCAATGTTGATTTTATTGGGCAGAGTTTCTGGTTTTTGGAGGGGTATCTCATTCCAATTTCCTTTTCAAGGGCTTCTGCTCGAGATGAAAAGGATTATATGGTGGTGTTGGTTAGAAACAGAACTGGAATGGAATAG 1173 47.57 MDGREGMALSGGSASYYIHRGGGVGGSGSGLPTAGSHASPVFRPMANQGVLSHSNLRGNSVGSTYAVEPSHSNYLRGMGINVSAGVNSSEPVKKKRGRPRKYAPDGQVSLGLSPMSAGSKLTPGSNSSTPRRRRGRPPGSGRKQQLALLGDWMNNSAGLAFAPHVIHVGAGEDIVAKVLSFAQQRPRALCILSGNGTVSSVTLRQPASTGVSVTYEGHFQILCLSGSYLVAEDGSPRSRTGGISVSLSSPDGHVIGGGVAVLMAAGPVQVVVCSFVYGAKIKNKQVAGSKNNDASGNEHHDNLVSPTSAPSAQTYNPSPIGVWPGSRSVDIHANIWYETSFQVSQVNVDFIGQSFWFLEGYLIPISFSRASARDEKDYMVVLVRNRTGME 390
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2736044 2742271 + ClG42_01g0027800.10 Clacu01g0278 239662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g0278 390 MobiDBLite consensus disorder prediction 287 312 - -
Clacu01g0278 390 MobiDBLite consensus disorder prediction 85 143 - -
Clacu01g0278 390 SUPERFAMILY AF0104/ALDC/Ptd012-like 161 276 - -
Clacu01g0278 390 MobiDBLite consensus disorder prediction 112 133 - -
Clacu01g0278 390 CDD DUF296 163 275 IPR005175 -
Clacu01g0278 390 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 73 307 IPR039605 GO:0003680(InterPro)
Clacu01g0278 390 ProSiteProfiles PPC domain profile profile. 158 296 IPR005175 -
Clacu01g0278 390 Gene3D - 163 291 - -
Clacu01g0278 390 Pfam Plants and Prokaryotes Conserved (PCC) domain 163 275 IPR005175 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0278 Clacu-Chr1:2736044 Clacu08g1080 Clacu-Chr8:20814560 6.50E-52 dispersed
Clacu01g0278 Clacu-Chr1:2736044 Clacu06g0375 Clacu-Chr6:4477924 3.70E-71 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g0278 - - - 0.0