Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g0284 ATGTCAACGCTGCCAGAAAGATTATTTGCCATCTTCTACCGGGATAGCTCAGCAGGGATTGTTTGGCTCTTAATTGCAATAAGGGCCTGGTTGGAGCTTTTTGCAGAACTTCTTTCAGCCTTGCTGTTTCTTGCTTGTAAAATGAATTTGGAGAGTCAAAACAAGAAGAAAGAGTATGCTGCTGATATTTTCTCCATAAAGGAGGCCCGAATGCGTATTCAACCTTTCATCCATCAAACCCCAGTTTTGTCTTCTGAGACTATTAATGCTGCTTCAGGAAAACAACTTTTCTTCAAATGTGAATGTTTCCAGAAGGGTGGAGCATTTAAATTCAGAGGTGCCTGCAATGCTATATTATCACTTGATGAGGACCAGGCTGCTAAAGGGGTTGTGACACATAGCAGTGGCAACCATGCTGCAGCTTTGTCTTTGGCTGCAAAACTGCGAGGAATCCCTGCATATATAGTTATACCAGAAAGTGCTCCAAAATGTAAAGTTGAAAATGTGATACGTTATGGTGGTCAGGTTATTTGGAGCAAAGACACAATACAGTCGAGGGAAACGACTGCCACGAAGGTTATGCAAGAAACTGGTGCACTTCTCATACACCCATATAATGATGGGCGCATAATAAGCGGGCAAGGTACCATCTCATTGGAGCTTCTGGAACAAGTCCCACAATTAGACACTTTAATCGTTCCAATAAGTGGTGGTGGTTTGATATCAGGAATTTCAGTGGCGGCAAAAGCCATCAATCCTGCCATCCGGATTTTTGCTGCAGAACCTAAGGGAGCTAATGATGCAGCCATGTCAAAAGCCGCTGGTAAGATAGTAAAACTGGCAGAGACCACCACCATAGCCGATGGTCTTCGAGCTTTTCTCGGTGACCTTACCTGGCCAATAATAAGAGATTTGGTGGATGATGTAATAACTGTGGAGGACACTGAGATAGTTGAAGCAATGAGACTTTGTCTTGAAGTGCTGAAAGTTGTTGTGGAACCTAGTGGGGCAATAGGCCTTGCTGCTGTTCTCTCTGATAGTTTCAAGCAAAACCCTTCATGGAAAGATTGCAACTGCATTGGCATTATACTTTCAGGAGGTAATGTTGATCTTGGCCATCCCCATGTGATTTTCCATTCCTTGGGAGACTTGTTTCCAATCCTTGGTTTATGCTGTGAAGCAAATATTGTCTAG 1194 43.3 MSTLPERLFAIFYRDSSAGIVWLLIAIRAWLELFAELLSALLFLACKMNLESQNKKKEYAADIFSIKEARMRIQPFIHQTPVLSSETINAASGKQLFFKCECFQKGGAFKFRGACNAILSLDEDQAAKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPESAPKCKVENVIRYGGQVIWSKDTIQSRETTATKVMQETGALLIHPYNDGRIISGQGTISLELLEQVPQLDTLIVPISGGGLISGISVAAKAINPAIRIFAAEPKGANDAAMSKAAGKIVKLAETTTIADGLRAFLGDLTWPIIRDLVDDVITVEDTEIVEAMRLCLEVLKVVVEPSGAIGLAAVLSDSFKQNPSWKDCNCIGIILSGGNVDLGHPHVIFHSLGDLFPILGLCCEANIV 397
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2827294 2832707 + ClG42_01g0028400.10 Clacu01g0284 239668

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g0284 397 Gene3D - 109 205 IPR036052 -
Clacu01g0284 397 SUPERFAMILY Tryptophan synthase beta subunit-like PLP-dependent enzymes 63 372 IPR036052 -
Clacu01g0284 397 Gene3D - 72 370 IPR036052 -
Clacu01g0284 397 CDD Thr-dehyd 65 370 - -
Clacu01g0284 397 PANTHER SERINE / THREONINE RACEMASE FAMILY MEMBER 55 372 - GO:0000287(PANTHER)|GO:0003941(PANTHER)|GO:0005524(PANTHER)|GO:0008721(PANTHER)|GO:0018114(PANTHER)|GO:0030170(PANTHER)|GO:0030378(PANTHER)|GO:0070179(PANTHER)
Clacu01g0284 397 ProSitePatterns Serine/threonine dehydratases pyridoxal-phosphate attachment site. 101 114 IPR000634 GO:0006520(InterPro)|GO:0030170(InterPro)
Clacu01g0284 397 Pfam Pyridoxal-phosphate dependent enzyme 73 344 IPR001926 -
Clacu01g0284 397 FunFam L-threonine dehydratase catabolic TdcB 179 370 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g0284 K12235 - - csv:101217208 588.956
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0284 Clacu-Chr1:2827294 Clacu04g1011 Clacu-Chr4:24355197 6.40E-39 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g336 . . . . . . . Bma14g00071 . . Cma02g01464 . Car02g01229 . . . Cpe05g00325 . . . . . . . . . . . . . . . . . Cone9ag0773 . Csa05g00293 Chy09g01213 . Blo03g00336 . . . . . . . . Cmo02g01499 . . . . . . . Bhi12g00238 . . Lac11g2107 Hepe06g1557 . Lcy12g1663 Cla01g00275 Cam01g0285 Cec01g0278 Cco01g0291 Clacu01g0284 Cmu01g0271 Cre09g2237 Lsi09g00272 . . Cme09g01750
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013496 1 2 1 2 1 1 0 0 1 1 0 1 0 1 1 0 0 2 1 1 1 1 0 1 1 0 1 1 2 1 26