Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g0304 ATGAAGAAAGAAGTGGCGGAGGTCATTCTCAGGCGCCGCGCTCTTCTTTACTCCTCCGATTCCGATTCCAGATTCTCCCTCAGATTGAGACGAGAGTTGTTGAAAATCGGAGATCCTTGCGGTTCAGATCTGGGAGAAGAGGCGATGGCGCCGTCGCCGGCGGAACCGATCGGCGATTCTGGAACAGGAGATTCTCAGAGATCTATACCGACGCCGTTTCTAACGAAAACTTATCAATTGGTTGATGATCCGGCTGTGGACGATCTCATCTCGTGGAATGAAGATGGATCTACCTTCATAGTTTGGCGACCGGCTGAATTTGCTCGAGATTTACTTCCTAAATACTTCAAGCACAATAATTTCTCTAGTTTCGTCCGTCAACTCAACACTTACGGGTTCCGAAAGGTTGTGCCGGACCGATGGGAATTTGCGAACGATTGTTTCCGGAGAGGTGAGAAAGGACTTCTCCGAGACATTCAGCGGCGTAAAGTGGCGCTGTCGGTAACAACAACGACGCCGGCTACTCCAGCTGCGGTGGCTGTGCCAGTGACGGTGGCGGCGTCTCCAGCAGTGTTGGCTCACGTTATATCACCGGCGAACTCTGCAGAAGAGCAAGTTACGTCCTCGAACTCATCGCCCATGGCATTTCAGCGAAGTACGAGCTGCACCACGACGCCGGAACTTGTGAGAGAGAATGAGCGGTTAAGGAAGGAGAATATGCAACTGAGTCACGAGTTGACCCAGTTGAAAGGACTCTGTAACAGCATACTATCGCTGATGACGAATTACGCATCAGATCACCATCACCAGTTGGAGTCGGTGAGCGTCCGAGACGGGAAGGCACTAGAGCTCTTACCGGCGAGGCAGGTGATGGAAGACGAAGGCGCCGTCAGCGACGGGGCTCATGAGGTGAGACTGAAGATGGAGGAGACGATGACAGCGGCAGCGGCGGCGGCAGGAATGACGCCGAAACTGTTCGGGGTATCGATCGGGGTGAAGCGGATGAGGAGAGAGGAAGAAGACGAGGAAGAGATGGTTGGGCAGAATCATGTACAGTCGGAAGAAGGGGAGACGGGGTCAGAGATCAAAGCTGAACCGTTGGATGAAAACTCTGAAAATCCAGAGGGATCCGCGTCGCCATGGCTTGAACTCGGAAATCAAGGCTCCTGA 1170 53.16 MKKEVAEVILRRRALLYSSDSDSRFSLRLRRELLKIGDPCGSDLGEEAMAPSPAEPIGDSGTGDSQRSIPTPFLTKTYQLVDDPAVDDLISWNEDGSTFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFANDCFRRGEKGLLRDIQRRKVALSVTTTTPATPAAVAVPVTVAASPAVLAHVISPANSAEEQVTSSNSSPMAFQRSTSCTTTPELVRENERLRKENMQLSHELTQLKGLCNSILSLMTNYASDHHHQLESVSVRDGKALELLPARQVMEDEGAVSDGAHEVRLKMEETMTAAAAAAGMTPKLFGVSIGVKRMRREEEDEEEMVGQNHVQSEEGETGSEIKAEPLDENSENPEGSASPWLELGNQGS 389
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3000734 3002775 + ClG42_01g0030400.10 Clacu01g0304 239688

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g0304 389 MobiDBLite consensus disorder prediction 44 68 - -
Clacu01g0304 389 Pfam HSF-type DNA-binding 73 162 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu01g0304 389 Gene3D - 65 163 IPR036388 -
Clacu01g0304 389 SUPERFAMILY Winged helix DNA-binding domain 70 162 IPR036390 -
Clacu01g0304 389 FunFam Heat stress transcription factor B-4 65 163 - -
Clacu01g0304 389 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 63 344 IPR027725 GO:0000978(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)
Clacu01g0304 389 ProSitePatterns HSF-type DNA-binding domain signature. 112 136 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu01g0304 389 MobiDBLite consensus disorder prediction 336 389 - -
Clacu01g0304 389 SMART hsfneu3 69 162 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu01g0304 389 MobiDBLite consensus disorder prediction 372 389 - -
Clacu01g0304 389 MobiDBLite consensus disorder prediction 336 370 - -
Clacu01g0304 389 PRINTS Heat shock factor (HSF) domain signature 73 96 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu01g0304 389 PRINTS Heat shock factor (HSF) domain signature 111 123 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu01g0304 389 PRINTS Heat shock factor (HSF) domain signature 124 136 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu01g0304 389 MobiDBLite consensus disorder prediction 203 224 - -
Clacu01g0304 389 Coils Coil 232 252 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g0304 K09419 - - csv:101203886 593.578
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0304 Clacu-Chr1:3000734 Clacu05g2195 Clacu-Chr5:30548182 4.30E-48 dispersed
Clacu01g1752 Clacu-Chr1:29676477 Clacu01g0304 Clacu-Chr1:3000734 7.60E-49 transposed
Clacu10g1561 Clacu-Chr10:28886329 Clacu01g0304 Clacu-Chr1:3000734 2.90E-37 transposed
Clacu01g0304 Clacu-Chr1:3000734 Clacu05g0939 Clacu-Chr5:8320755 4.90E-60 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g620 . Blo15g00160 . . . Bpe07g00947 . . Cmo16g00141 Cmo18g01259 . Cma15g01203 . Car15g01090 Sed01g3914 . Cpe14g00115 Bhi01g01343 Tan01g0269 Cmetu06g2712 Lac11g2126 Hepe07g0173 Mch10g0169 . Cla01g00293 Cam01g0304 Cec01g0295 Cco01g0311 Clacu01g0304 Cmu01g0289 . . . . . . Csa05g00316 Chy09g01192 Cme06g00981 . . Bda06g00674 . . . . Bma12g01125 . . Cmo15g01268 Cma16g00136 Cma18g01236 Car16g00120 Car18g01140 Cpe09g00100 Cpe13g00172 Bhi12g00210 . . Lac11g2126 Hepe06g1576 . Lcy12g1687 . . . . . . . . Csa03g01695 Chy06g00930 Cme09g01727
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Clacu05g0557 . 37 237 HSF AT4G17750 59.6 1.8e-62 237.3
Clacu09g0731 . 41 282 HSF AT4G17750 51.0 1.8e-59 227.3
Clacu08g1864 . 42 242 HSF AT4G17750 54.6 5.9e-58 222.2
Clacu10g1915 . 306 465 HSF AT4G17750 56.3 1.5e-45 181.0
Clacu01g0304 . 41 163 HSF AT4G17750 61.8 3.6e-39 159.8
Clacu08g1762 . 14 118 HSF AT4G17750 69.5 3.6e-39 159.8
Clacu05g2195 . 20 118 HSF AT4G17750 69.7 2.3e-38 157.1
Clacu05g0557 . 38 242 HSF AT5G16820 57.0 4.7e-60 229.2
Clacu07g0047 . 41 262 HSF AT5G16820 51.7 3.0e-59 226.5
Clacu09g0731 . 42 254 HSF AT5G16820 54.0 5.4e-56 215.7
Clacu08g1864 . 43 253 HSF AT5G16820 51.1 4.5e-55 212.6
Clacu10g1915 . 305 465 HSF AT5G16820 57.1 2.3e-46 183.7
Clacu01g2475 . 9 191 HSF AT5G16820 50.3 5.2e-43 172.6
Clacu02g1871 . 13 188 HSF AT5G16820 50.3 2.9e-41 166.8
Clacu10g0142 . 24 515 HSF AT1G32330 54.0 1.1e-120 430.6
Clacu05g0557 . 26 227 HSF AT1G32330 54.0 1.0e-59 228.0
Clacu09g0731 . 30 250 HSF AT1G32330 51.8 9.8e-58 221.5
Clacu07g0047 . 27 226 HSF AT1G32330 53.1 3.7e-57 219.5
Clacu08g1864 . 31 223 HSF AT1G32330 54.1 1.0e-54 211.5
Clacu10g1915 . 294 448 HSF AT1G32330 54.8 2.5e-45 180.3
Clacu08g1762 . 20 117 HSF AT1G32330 72.4 3.0e-38 156.8
Clacu07g0047 . 41 262 HSF AT3G02990 52.6 2.9e-62 236.5
Clacu05g0557 . 38 241 HSF AT3G02990 57.6 2.4e-61 233.4
Clacu09g0731 . 42 265 HSF AT3G02990 52.4 1.9e-58 223.8
Clacu08g1864 . 43 242 HSF AT3G02990 51.7 5.8e-55 212.2
Clacu10g1915 . 305 465 HSF AT3G02990 52.7 5.1e-43 172.6
Clacu05g0557 . 25 287 HSF AT2G26150 52.3 3.4e-68 255.8
Clacu09g0731 . 30 249 HSF AT2G26150 54.3 5.0e-64 241.9
Clacu10g0142 . 29 243 HSF AT2G26150 58.8 1.2e-60 230.7
Clacu11g0317 . 28 247 HSF AT2G26150 51.1 8.9e-53 204.5
Clacu10g1915 . 294 452 HSF AT2G26150 52.2 2.4e-42 169.9
Clacu03g0743 . 5 156 HSF AT2G26150 52.0 3.9e-40 162.5
Clacu10g1915 . 290 465 HSF AT5G03720 68.2 2.3e-63 240.0
Clacu05g0350 . 6 353 HSF AT4G13980 54.4 1.6e-97 353.6
Clacu02g1871 . 4 183 HSF AT4G13980 50.6 1.3e-43 174.5
Clacu05g0557 . 26 218 HSF AT5G43840 54.4 1.6e-55 213.4
Clacu08g1864 . 31 234 HSF AT5G43840 50.5 1.5e-45 180.3
Clacu09g0731 . 30 368 HSF AT3G22830 53.4 5.1e-92 335.1
Clacu07g0047 . 16 350 HSF AT3G22830 50.9 6.5e-87 318.2
Clacu08g1864 . 31 253 HSF AT3G22830 54.1 2.0e-64 243.4
Clacu10g0142 . 12 242 HSF AT3G22830 55.7 2.2e-63 240.0
Clacu09g0731 . 29 343 HSF AT3G51910 50.9 2.0e-71 266.2
Clacu07g0047 . 26 322 HSF AT3G51910 52.5 8.2e-70 260.8
Clacu08g1864 . 31 223 HSF AT3G51910 56.0 4.8e-54 208.4
Clacu07g0047 . 27 321 HSF AT3G63350 50.3 4.4e-66 248.4
Clacu08g1864 . 31 230 HSF AT3G63350 52.5 3.4e-50 195.7
Clacu02g1871 . 5 140 HSF AT3G63350 56.6 3.0e-38 156.0
Clacu11g0317 . 32 248 HSF AT5G54070 51.4 2.5e-52 203.0
Clacu01g1752 . 46 337 HSF AT4G36990 51.8 2.3e-70 262.7
Clacu08g1762 . 17 115 HSF AT5G62020 67.7 1.8e-38 156.8
Clacu01g0304 . 64 385 HSF AT4G11660 51.9 7.9e-79 291.2
Clacu08g1762 . 16 121 HSF AT4G11660 71.7 3.7e-44 176.0
Clacu01g1752 . 46 148 HSF AT4G11660 72.8 1.7e-41 167.2
Clacu03g1284 . 26 125 HSF AT4G11660 68.0 1.0e-38 157.9
Clacu10g0142 . 33 126 HSF AT4G11660 69.1 1.7e-36 150.6
Clacu10g1561 . 14 222 HSF AT2G41690 53.6 9.1e-52 200.7
Clacu04g0365 . 7 214 HSF AT2G41690 51.0 2.5e-49 192.6
Clacu08g1762 . 9 372 HSF AT1G46264 52.9 2.0e-89 326.2
Clacu05g2195 . 1 238 HSF AT1G46264 63.8 2.0e-81 299.7
Clacu03g1284 . 25 206 HSF AT1G46264 51.9 2.9e-51 199.5
Clacu10g0142 . 33 138 HSF AT1G46264 73.6 3.5e-41 166.0
Clacu02g1871 . 5 115 HSF AT1G46264 63.1 4.0e-37 152.5
Clacu10g1561 . 21 118 HSF AT1G46264 68.4 6.9e-37 151.8
Clacu06g0912 . 9 142 HSF AT3G24520 64.9 3.8e-45 179.1
Clacu05g0557 . 37 237 HSF AT4G17750 59.6 1.8e-62 237.3
Clacu09g0731 . 41 282 HSF AT4G17750 51.0 1.8e-59 227.3
Clacu08g1864 . 42 242 HSF AT4G17750 54.6 5.9e-58 222.2
Clacu10g1915 . 306 465 HSF AT4G17750 56.3 1.5e-45 181.0
Clacu01g0304 . 41 163 HSF AT4G17750 61.8 3.6e-39 159.8
Clacu08g1762 . 14 118 HSF AT4G17750 69.5 3.6e-39 159.8
Clacu05g2195 . 20 118 HSF AT4G17750 69.7 2.3e-38 157.1
Clacu05g0557 . 38 242 HSF AT5G16820 57.0 4.7e-60 229.2
Clacu07g0047 . 41 262 HSF AT5G16820 51.7 3.0e-59 226.5
Clacu09g0731 . 42 254 HSF AT5G16820 54.0 5.4e-56 215.7
Clacu08g1864 . 43 253 HSF AT5G16820 51.1 4.5e-55 212.6
Clacu10g1915 . 305 465 HSF AT5G16820 57.1 2.3e-46 183.7
Clacu01g2475 . 9 191 HSF AT5G16820 50.3 5.2e-43 172.6
Clacu02g1871 . 13 188 HSF AT5G16820 50.3 2.9e-41 166.8
Clacu10g0142 . 24 515 HSF AT1G32330 54.0 1.1e-120 430.6
Clacu05g0557 . 26 227 HSF AT1G32330 54.0 1.0e-59 228.0
Clacu09g0731 . 30 250 HSF AT1G32330 51.8 9.8e-58 221.5
Clacu07g0047 . 27 226 HSF AT1G32330 53.1 3.7e-57 219.5
Clacu08g1864 . 31 223 HSF AT1G32330 54.1 1.0e-54 211.5
Clacu10g1915 . 294 448 HSF AT1G32330 54.8 2.5e-45 180.3
Clacu08g1762 . 20 117 HSF AT1G32330 72.4 3.0e-38 156.8
Clacu07g0047 . 41 262 HSF AT3G02990 52.6 2.9e-62 236.5
Clacu05g0557 . 38 241 HSF AT3G02990 57.6 2.4e-61 233.4
Clacu09g0731 . 42 265 HSF AT3G02990 52.4 1.9e-58 223.8
Clacu08g1864 . 43 242 HSF AT3G02990 51.7 5.8e-55 212.2
Clacu10g1915 . 305 465 HSF AT3G02990 52.7 5.1e-43 172.6
Clacu05g0557 . 25 287 HSF AT2G26150 52.3 3.4e-68 255.8
Clacu09g0731 . 30 249 HSF AT2G26150 54.3 5.0e-64 241.9
Clacu10g0142 . 29 243 HSF AT2G26150 58.8 1.2e-60 230.7
Clacu11g0317 . 28 247 HSF AT2G26150 51.1 8.9e-53 204.5
Clacu10g1915 . 294 452 HSF AT2G26150 52.2 2.4e-42 169.9
Clacu03g0743 . 5 156 HSF AT2G26150 52.0 3.9e-40 162.5
Clacu10g1915 . 290 465 HSF AT5G03720 68.2 2.3e-63 240.0
Clacu05g0350 . 6 353 HSF AT4G13980 54.4 1.6e-97 353.6
Clacu02g1871 . 4 183 HSF AT4G13980 50.6 1.3e-43 174.5
Clacu05g0557 . 26 218 HSF AT5G43840 54.4 1.6e-55 213.4
Clacu08g1864 . 31 234 HSF AT5G43840 50.5 1.5e-45 180.3
Clacu09g0731 . 30 368 HSF AT3G22830 53.4 5.1e-92 335.1
Clacu07g0047 . 16 350 HSF AT3G22830 50.9 6.5e-87 318.2
Clacu08g1864 . 31 253 HSF AT3G22830 54.1 2.0e-64 243.4
Clacu10g0142 . 12 242 HSF AT3G22830 55.7 2.2e-63 240.0
Clacu09g0731 . 29 343 HSF AT3G51910 50.9 2.0e-71 266.2
Clacu07g0047 . 26 322 HSF AT3G51910 52.5 8.2e-70 260.8
Clacu08g1864 . 31 223 HSF AT3G51910 56.0 4.8e-54 208.4
Clacu07g0047 . 27 321 HSF AT3G63350 50.3 4.4e-66 248.4
Clacu08g1864 . 31 230 HSF AT3G63350 52.5 3.4e-50 195.7
Clacu02g1871 . 5 140 HSF AT3G63350 56.6 3.0e-38 156.0
Clacu11g0317 . 32 248 HSF AT5G54070 51.4 2.5e-52 203.0
Clacu01g1752 . 46 337 HSF AT4G36990 51.8 2.3e-70 262.7
Clacu08g1762 . 17 115 HSF AT5G62020 67.7 1.8e-38 156.8
Clacu01g0304 . 64 385 HSF AT4G11660 51.9 7.9e-79 291.2
Clacu08g1762 . 16 121 HSF AT4G11660 71.7 3.7e-44 176.0
Clacu01g1752 . 46 148 HSF AT4G11660 72.8 1.7e-41 167.2
Clacu03g1284 . 26 125 HSF AT4G11660 68.0 1.0e-38 157.9
Clacu10g0142 . 33 126 HSF AT4G11660 69.1 1.7e-36 150.6
Clacu10g1561 . 14 222 HSF AT2G41690 53.6 9.1e-52 200.7
Clacu04g0365 . 7 214 HSF AT2G41690 51.0 2.5e-49 192.6
Clacu08g1762 . 9 372 HSF AT1G46264 52.9 2.0e-89 326.2
Clacu05g2195 . 1 238 HSF AT1G46264 63.8 2.0e-81 299.7
Clacu03g1284 . 25 206 HSF AT1G46264 51.9 2.9e-51 199.5
Clacu10g0142 . 33 138 HSF AT1G46264 73.6 3.5e-41 166.0
Clacu02g1871 . 5 115 HSF AT1G46264 63.1 4.0e-37 152.5
Clacu10g1561 . 21 118 HSF AT1G46264 68.4 6.9e-37 151.8
Clacu06g0912 . 9 142 HSF AT3G24520 64.9 3.8e-45 179.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004116 2 2 2 0 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 3 2 2 44
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46946 PF00447 HSF_DNA-bind 4.10E-32 CL0123 Clacu TF