Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g0311 ATGTCTGCCTCTGATTCTGCTTCTGTTTCTCTACTTTCTGACCAACAAAACATTCCGACACTTAAAACTCCTTTGATCACCCAAACCCCAACACAAACAGAGACAAAATTTCCATATCGCGCTCATATTCTTACAGAGTCCAAATGTATAGCCAACATCGCACTTCCGATGATTCTTGTCGGCTTTTTAATGTACTCTCGTTCGATGATTTCCATGTTGTTTCTTGGCCGGTTAGGTGGTTTATCCTTGGCTGGTGGTTCACTTGCTATTGGCTTTGCTAATATCACTGGCTACTCTGTTCTCTCTGGTCTTGCTATTGGAATGGAACCCATTTGTGGTCAAGCTTTTGGAGCTAAAAAATTCAAACTTTTAGGACTTGCTCTTCAAAGAACTATCATTCTTCTCCTAATTTCTTCATTACCCATTTCCTTTTTATGGTTCAACATGAAGAAAATCCTTCTCTTTTGTGGTCAAGATGATGATATTGCCAATGAAGCTCATTCCTATATCCTCTGTTCTATCCCTGACTTAATTGCTCTGTCTTTTCTTCACCCTTTACGAATTTACCTTCGTAGTCAATCCATTAATCTCCCTCTCACATACTGTGCTATATTGGCCATTATATTTCACATCCCAATTAATTACCTTTTCGTCTCTGTTTTCGAATGGGGAATTCGTGGCGTTGCTTTAGGAGCTGTCTGGACTAATTTCAACTTCGTCGGATCATTGGTTGTCTTCATCTTAATCTCCGGTGTCTACAAGAAAACATGGCCGGGAATGTCGTCGGATTGTTTGAAAGAATGGAAATCGCTACTTGGGTTAGCAATTCCAAGCTGTATTTCCGTTTGTTTAGAATGGTGGTGGTATGAAATCATGATTTTATTAAGTGGGTTCATGATTAATCCTCAATCCACAGTAGCTTCAATGGGGATTTTGATTCAAACCACTGCTTTAATCTACATTTTCCCATCATCTTTAAGCTTTGGAGTATCAACAAGAGTAGGAAACCAATTGGGTGCAAATCATCCAAACAGCGCAAAATTAGCCGCCGTTGTTGGACTCTGTATAAGCTTCTTGTTAGGTATTTCAGCGTTGGTTTTCGCTTTCAGTATCCGGAAAGTATGGGCGACAATGTTCACAGATGAGACAGAAATCATGGAACTAACATCTGTAATTCTCCCAATCATCGGACTCTGTGAACTTGGAAACTGTCCACAGACGACAAGTTGTGGAGTATTAAGAGGAACAGCCAGGCCAAAATTGGGGGCGAATATAAATTTGGGATGTTTTTACATGGTGGGAATGCCGGTGGCGATATGGCTGAGCTTTTACGGCGGCTGGGATTTCAAAGGGCTGTGGATTGGGCTGTTGGCGGCGCAGGGTTCATGTGCAATGACGATGCTGATGGTTCTGGCTCGAACCAATTGGGAAGAACAAGCTGAGAGAGCTAAGGAACTGACTAGAAATGGCGTGGAGGAGATTGAGAATGGAGATGAAGAAGAAAGTGGGGAATTTCAGGAAGAAGAAGAAGAACATCATCATCATCATCAACAACAACAACAACAAGATGATGATGATGATGATGAAATAAAGGAGTGTTTTAATTCAATGAATGGAAGAGATTTGTTAGTGTGA 1635 41.04 MSASDSASVSLLSDQQNIPTLKTPLITQTPTQTETKFPYRAHILTESKCIANIALPMILVGFLMYSRSMISMLFLGRLGGLSLAGGSLAIGFANITGYSVLSGLAIGMEPICGQAFGAKKFKLLGLALQRTIILLLISSLPISFLWFNMKKILLFCGQDDDIANEAHSYILCSIPDLIALSFLHPLRIYLRSQSINLPLTYCAILAIIFHIPINYLFVSVFEWGIRGVALGAVWTNFNFVGSLVVFILISGVYKKTWPGMSSDCLKEWKSLLGLAIPSCISVCLEWWWYEIMILLSGFMINPQSTVASMGILIQTTALIYIFPSSLSFGVSTRVGNQLGANHPNSAKLAAVVGLCISFLLGISALVFAFSIRKVWATMFTDETEIMELTSVILPIIGLCELGNCPQTTSCGVLRGTARPKLGANINLGCFYMVGMPVAIWLSFYGGWDFKGLWIGLLAAQGSCAMTMLMVLARTNWEEQAERAKELTRNGVEEIENGDEEESGEFQEEEEEHHHHHQQQQQQDDDDDDEIKECFNSMNGRDLLV 544
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3057901 3059535 - ClG42_01g0031100.10 Clacu01g0311 239695

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g0311 544 CDD MATE_eukaryotic 46 482 IPR045069 GO:0042910(InterPro)|GO:1990961(InterPro)
Clacu01g0311 544 Pfam MatE 56 216 IPR002528 GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0042910(InterPro)|GO:0055085(InterPro)
Clacu01g0311 544 Pfam MatE 277 439 IPR002528 GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0042910(InterPro)|GO:0055085(InterPro)
Clacu01g0311 544 PANTHER MULTIDRUG RESISTANCE PROTEIN 41 479 - GO:0016020(PANTHER)|GO:0022857(PANTHER)
Clacu01g0311 544 NCBIfam MATE family efflux transporter 56 453 IPR002528 GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0042910(InterPro)|GO:0055085(InterPro)
Clacu01g0311 544 MobiDBLite consensus disorder prediction 507 522 - -
Clacu01g0311 544 MobiDBLite consensus disorder prediction 483 544 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g0311 K03327 - - csv:101219094 857.825
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0311 Clacu-Chr1:3057901 Clacu03g1649 Clacu-Chr3:30130379 2.10E-149 dispersed
Clacu03g0859 Clacu-Chr3:10252351 Clacu01g0311 Clacu-Chr1:3057901 1.10E-51 transposed
Clacu08g1349 Clacu-Chr8:23548145 Clacu01g0311 Clacu-Chr1:3057901 8.70E-162 transposed
Clacu01g0311 Clacu-Chr1:3057901 Clacu05g0923 Clacu-Chr5:8173689 1.80E-185 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g400 . . . . . . . . . . Cma02g01482 Cma15g01199 Car02g01242 Car15g01086 . . Cpe05g00307 . . . . . . . . . . . . . . Cone8ag0330 . Cone6ag0749 Cone9ag0752 . Csa05g00322 . . Blo03g00373 . . . . Bpe11g00685 . . . Cmo02g01521 Cmo15g01264 . . . . . Cpe13g00176 Bhi12g00205 . . Lac11g2136 Hepe06g1582 . Lcy12g1700 Cla01g00299 Cam01g0311 Cec01g0302 Cco01g0318 Clacu01g0311 Cmu01g0296 Cre09g2212 Lsi09g00305 . . Cme09g01720
Vvi16g598 . . Bda05g00053 . Bpe03g00129 Bpe07g00952 Bma10g01194 Bma14g02065 Cmo16g00156 Cmo18g01242 . Cma15g01199 . Car15g01086 Sed01g3956 . Cpe14g00126 Bhi01g01362 Tan01g0293 Cmetu09g0649 Lac11g2136 Hepe07g0187 Mch10g0183 . Cla01g00299 Cam01g0311 Cec01g0302 Cco01g0318 Clacu01g0311 Cmu01g0296 Cre09g2212 . Cone5ag0843 . Cone15ag0117 Lsi05g01262 Csa05g00322 . Cme06g00965 Blo07g00425 Blo09g00089 Bda06g00665 . . . . . . . Cmo15g01264 . . Car16g00129 Car18g01127 Cpe09g00110 Cpe13g00176 Bhi12g00548 . . . . . . Cla05g00850 Cam05g0936 Cec05g0940 Cco05g0942 Clacu05g0923 Cmu05g0882 Cre05g0967 . Csa03g01680 Chy06g00914 Cme09g01720
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001123 3 2 4 5 4 2 4 2 2 1 2 2 2 2 2 4 2 7 4 2 2 2 2 1 2 2 2 4 2 2 79