Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g0313 ATGGCTGACCAAAAGCTTCAAATTAATGAAAGCCAAATAGACCAATCTCTTCATCCTCCTCCTCCAATATCTAAACCAATTGTCATTGACCCTTTTGTTCCTTCTGTCCCCACATCCCAAAATCCAAATCCTAAGTCACAAGAGGGTGAAGGTGAACAAAAACAACCTAATTTGCCTCAACAACTCCCACCACTACCTCCTTCATCTTCCATGGCTTCTTCTTCAACTAAGAAGCATTCTTTGTATAGAGGAATCCGCTGCCGGAGCGGCAAATGGGTGTCCGAGATACGCGAGCCACGTAAGACAACACGCATATGGCTCGGCACGTTTCCAACTGCAGAGATGGCTGCTGCCGCTTATGATGTTGCTGCCCTTGCCCTCAAAGGCGGCGATGCGGTTCTTAACTTCCCTTCCTCTCTTCCCACCTACCCTGTTCCCGCGTCAACTTCTCCGGTCGATATTCGCACAGCTGCCTCCACTGCCGCTGCTGCTACCGCCGCTAATGCGTTGAAGAAAGCTGCGTCGTCAACTTCCCCGGTTGACGTTTGCACTACGGAAGATAGTAGCAATACCACGATGGGAATGGAGGAGTTTGTGGATGAAGAAGAAATTTTTGGGATGCCGGGTTTGTTGGCGGACATGGCGGAGGGGATGATGGTGTCCCCGCCGAGAATAAACTCGCCACCACTGTCCGATGACTCGATGGAAAATTCTGATGGAACGGAAAGTTTATGGAGCTACTTTTGA 747 49.8 MADQKLQINESQIDQSLHPPPPISKPIVIDPFVPSVPTSQNPNPKSQEGEGEQKQPNLPQQLPPLPPSSSMASSSTKKHSLYRGIRCRSGKWVSEIREPRKTTRIWLGTFPTAEMAAAAYDVAALALKGGDAVLNFPSSLPTYPVPASTSPVDIRTAASTAAAATAANALKKAASSTSPVDVCTTEDSSNTTMGMEEFVDEEEIFGMPGLLADMAEGMMVSPPRINSPPLSDDSMENSDGTESLWSYF 248
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3086118 3086864 + ClG42_01g0031300.10 Clacu01g0313 239697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g0313 248 CDD AP2 80 139 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu01g0313 248 FunFam Ethylene-responsive transcription factor 2 80 138 - -
Clacu01g0313 248 MobiDBLite consensus disorder prediction 223 248 - -
Clacu01g0313 248 Gene3D AP2/ERF domain 81 138 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu01g0313 248 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 69 247 IPR045277 GO:0003700(InterPro)
Clacu01g0313 248 MobiDBLite consensus disorder prediction 34 58 - -
Clacu01g0313 248 ProSiteProfiles AP2/ERF domain profile. 81 137 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu01g0313 248 MobiDBLite consensus disorder prediction 1 82 - -
Clacu01g0313 248 MobiDBLite consensus disorder prediction 1 18 - -
Clacu01g0313 248 Pfam AP2 domain 81 129 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu01g0313 248 MobiDBLite consensus disorder prediction 227 248 - -
Clacu01g0313 248 SMART rav1_2 81 143 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu01g0313 248 SUPERFAMILY DNA-binding domain 80 139 IPR016177 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0313 Clacu-Chr1:3086118 Clacu05g0920 Clacu-Chr5:8147043 2.30E-39 dispersed
Clacu01g0313 Clacu-Chr1:3086118 Clacu01g0314 Clacu-Chr1:3113053 4.10E-28 tandem
Clacu10g0365 Clacu-Chr10:4637407 Clacu01g0313 Clacu-Chr1:3086118 5.30E-51 transposed
Clacu01g0313 Clacu-Chr1:3086118 Clacu05g0919 Clacu-Chr5:8126989 2.10E-32 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46947 PF00847 AP2 2.40E-10 CL0081 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g0313 - - - 0.0