Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g0314 ATGGATTGGTTCGCTCAATTTTCTGACCCTCTTCCTTATTATGCTAATTGTAGTTACAAATCGGAATCCTCTTCCACGTTTTCAGACGCCGGAACACCTCCTCATACGGTCGCTAACTCCGACGAAGAAGTGATTCTGGCGTCCAACCGCCCAAAGCGGCGGGCCGGTCGCCGGGTTTTTAAAGAAACCAGACATCCGGTTTACAGAGGAGTACGCCGGAGGAATAACGACAAATGGGTTTGTGAGCTGAGGGAGCCAAATAAGAAGACCAGGATTTGGCTCGGGACTTACCCAACGGCGGACATGGCGGCGCGTGCGCACGATGTAGCGGCACTCGCGTTGAGAGGGAAATCGGCTTGTCTCAATTTCGCTGACTCTGCTTGGCGGTTCCCGATTCCGGCGACTGATGACCCGTCTGTGATCAGGGAGGCGGCGGCGAGGGCGGCGAATGAGTGTAAGGATGAGGAATGTAATGTGGGTCGGGAAGATGACGACGGCGTTTCGGGTCAGGCGACGGCGGATCCTGACCGACCGGATTATATCGACGATGAGGCTTTGTCGAATATGCCGATGTTGCTTGCCAGCATGGCGGAAGGACTTCTTCTTTCTCCTCCATCTTTTTGTGTCAATGATGACGTGGAGTGGGATGATGTGGCAATGAATGATGATGTGTCATTGTGGAGCTTTTAG 690 53.33 MDWFAQFSDPLPYYANCSYKSESSSTFSDAGTPPHTVANSDEEVILASNRPKRRAGRRVFKETRHPVYRGVRRRNNDKWVCELREPNKKTRIWLGTYPTADMAARAHDVAALALRGKSACLNFADSAWRFPIPATDDPSVIREAAARAANECKDEECNVGREDDDGVSGQATADPDRPDYIDDEALSNMPMLLASMAEGLLLSPPSFCVNDDVEWDDVAMNDDVSLWSF 229
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3113053 3113742 + ClG42_01g0031400.10 Clacu01g0314 239698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g0314 229 ProSiteProfiles AP2/ERF domain profile. 67 124 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu01g0314 229 SMART rav1_2 67 130 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu01g0314 229 MobiDBLite consensus disorder prediction 158 178 - -
Clacu01g0314 229 FunFam Ethylene-responsive transcription factor 2 66 125 - -
Clacu01g0314 229 Pfam AP2 domain 66 116 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu01g0314 229 Gene3D AP2/ERF domain 67 125 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu01g0314 229 CDD AP2 68 126 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu01g0314 229 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 23 229 IPR045277 GO:0003700(InterPro)
Clacu01g0314 229 SUPERFAMILY DNA-binding domain 67 126 IPR016177 GO:0003677(InterPro)
Clacu01g0314 229 PRINTS Ethylene responsive element binding protein signature 90 106 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu01g0314 229 PRINTS Ethylene responsive element binding protein signature 68 79 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0314 Clacu-Chr1:3113053 Clacu01g0571 Clacu-Chr1:5786796 5.70E-56 dispersed
Clacu01g0313 Clacu-Chr1:3086118 Clacu01g0314 Clacu-Chr1:3113053 4.10E-28 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46948 PF00847 AP2 1.30E-13 CL0081 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g0314 - - - 0.0