Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g0328 ATGCCTCCTTTGCCTCTCCAAGGGTCACCGGCTGCAGTGGTTGTCTTCTCTGGTTTTTCCCCCATTTATCAACAATATATTTCAACCCTTACCCTTCAAGATTTACTCATAGAAGGTAAAGCTTTGAGAAGCAAAATGGTGAGAGGAAAAACACAAATGAAGCGGATAGAAAATGCTACAAGCAGGCAAGTTACCTTTTCAAAGCGCAGAAATGGCTTACTCAAGAAGGCTTTTGAGCTTTCAGTTCTTTGTGATGCTGAAGTTGCACTTATCATTTTCTCTCCAAGAGGCAAGCTTTACGAGTTTTCAAATTGCAGTATGAACAAGACAATTGATCGCTATCAGAACAGAACCAAAGATTTGATGTCAAGCAACAACACAGTTGAAGATGTGCAGTTGGAGAAGGAATATGACTCCTTTAGCATGACTAAGAAGTTAGAGCACCTTGAAGTTTGTAAAAGAAAACTGTTGGGAGATGGCTTGGATTTGTGTTCCATTGATGAGTTGCAGCAGCTTGAAAGGCAACTTGAAAGAAGCTTAAGCAGAATTAGGTCAAGAAAGTATCAAATGCTGAAGGAAGAAATTATGAAGCTGAAGGAAGAGGAGAAAATGTTGCTGGAAGAAAATGCAGCACTGCAGATTAAGGTTAGTACTGAGTCATCAAGAAAACAAGAAAGCAATCAAAGATCAGAATCATCAAATCGTCAAGAGATAATGGATGTGGAAACTGAACTATTCATAGGACCACCAGAGAGAAGAAGCAACAATAATAATGGTTTCCTGTAG 786 39.31 MPPLPLQGSPAAVVVFSGFSPIYQQYISTLTLQDLLIEGKALRSKMVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSNCSMNKTIDRYQNRTKDLMSSNNTVEDVQLEKEYDSFSMTKKLEHLEVCKRKLLGDGLDLCSIDELQQLERQLERSLSRIRSRKYQMLKEEIMKLKEEEKMLLEENAALQIKVSTESSRKQESNQRSESSNRQEIMDVETELFIGPPERRSNNNNGFL 261
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3259190 3264881 + ClG42_01g0032800.10 Clacu01g0328 239712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g0328 261 SMART madsneu2 46 105 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu01g0328 261 SUPERFAMILY SRF-like 48 119 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu01g0328 261 CDD MADS_MEF2_like 48 123 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Clacu01g0328 261 ProSitePatterns MADS-box domain signature. 48 102 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu01g0328 261 MobiDBLite consensus disorder prediction 217 238 - -
Clacu01g0328 261 FunFam Agamous-like MADS-box protein AGL13 58 124 - -
Clacu01g0328 261 Coils Coil 166 186 - -
Clacu01g0328 261 Coils Coil 188 215 - -
Clacu01g0328 261 PANTHER SERUM RESPONSE FACTOR HOMOLOG 46 228 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Clacu01g0328 261 MobiDBLite consensus disorder prediction 222 238 - -
Clacu01g0328 261 ProSiteProfiles MADS-box domain profile. 46 106 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu01g0328 261 PRINTS MADS domain signature 48 68 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu01g0328 261 PRINTS MADS domain signature 68 83 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu01g0328 261 PRINTS MADS domain signature 83 104 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu01g0328 261 Pfam K-box region 133 216 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Clacu01g0328 261 Gene3D - 58 136 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu01g0328 261 ProSiteProfiles K-box domain profile. 132 222 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Clacu01g0328 261 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 55 102 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0328 Clacu-Chr1:3259190 Clacu06g0023 Clacu-Chr6:466375 5.70E-52 dispersed
Clacu01g0328 Clacu-Chr1:3259190 Clacu05g0226 Clacu-Chr5:1987508 3.40E-49 wgd
Clacu01g0328 Clacu-Chr1:3259190 Clacu05g0909 Clacu-Chr5:8046292 3.30E-44 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46950 PF01486 K-box 9.80E-22 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g0328 - - - 0.0