Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g0329 ATGAGGGTTTTGACGACTAATTCTTCTGTTCTTCTTGTTCCTTCAAACCCATATCAGAATTCTTCTCTCTTCCCCTGTAAACGCAAATCCAAGAAGAACAACCATGCCATAGTCCCTATGGCCAGGCTATTTGGGCCAGCTATATTTGAAGCTTCGAAGCTGAAGGTTCTGTTTTTAGGAGTGGATGAGAAGAAGCATCCAGGAAAATTTCCAAGAACTTATACGCTAACTCATAGCGATATAACTTCTAAACTCACTCTTGCCATTTCTCAGTCCATTAACAACTCTCAGTTACAAGGATGGTACAATTGGCTGCAAAGGGATGAAGTGGTAGGAGAATGGAAGAAAGTGAAAGGAAAAATGTCTCTTCATGTTCATTGCCATATTAGTGGTGGCCATTTTCTTTTAGATCTTTGTGCTAAACTCAGATACTTCATCTTTCGCAAAGAACTTCCTGTGGTGCTGAATGCTTTTGTCCATGGAGATGTGGACTTGTTCAACAATTACCCAGAATTACAAGAGGCTTTGGTTTGGGTTTATTTTCACTCCAATATTCCAGAATTCAACAAAGTGGAATGTTGGGGCCCATTAAAGGATCCAGCCCCACCTTCAACTGGGCCCTATGGGCCCAAGTCAGATGAGCCCACTCAAAGCCAGTCCATGTGGGATTTGGGCCGGCTGGAGCGGCCCAAACCTTGCCAAGAAGATTGCAATTGTTGCTTCCCAACCATCCCTTCCATTTCATGGTCCCCCCAAAATGAGTTGGAGAGCACCTGA 777 43.76 MRVLTTNSSVLLVPSNPYQNSSLFPCKRKSKKNNHAIVPMARLFGPAIFEASKLKVLFLGVDEKKHPGKFPRTYTLTHSDITSKLTLAISQSINNSQLQGWYNWLQRDEVVGEWKKVKGKMSLHVHCHISGGHFLLDLCAKLRYFIFRKELPVVLNAFVHGDVDLFNNYPELQEALVWVYFHSNIPEFNKVECWGPLKDPAPPSTGPYGPKSDEPTQSQSMWDLGRLERPKPCQEDCNCCFPTIPSISWSPQNELEST 258
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3272279 3274117 + ClG42_01g0032900.10 Clacu01g0329 239713

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g0329 258 MobiDBLite consensus disorder prediction 202 221 - -
Clacu01g0329 258 Pfam Staygreen protein 49 199 IPR024438 -
Clacu01g0329 258 PANTHER PROTEIN STAY-GREEN 1, CHLOROPLASTIC-RELATED 17 252 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g0329 K22013 - - csv:101206296 473.011
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0329 Clacu-Chr1:3272279 Clacu08g0772 Clacu-Chr8:17755685 1.90E-47 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g424 . . . . . . . . . . Cma02g01495 . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g00337 . . . . . . . . . . . . . . . . . . . Bhi12g00332 . . Lac11g2158 Hepe06g1598 . Lcy12g1716 Cla01g00317 Cam01g0327 Cec01g0319 Cco01g0336 Clacu01g0329 Cmu01g0313 Cre09g2198 Lsi09g00322 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012467 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 29