Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g0330 ATGGAAGATCAAGCCCTTCCTCAGCGGACCCATCAATCTTCTTCCACGCCTTCTCCTTCTCCTTCTTCTTCTTCTTCTTCTTCTTCGTCTTCTTTACACCTCAATTTGCCGCCTTCAATGTCTCGGCCTTCTCACTCACTTGAAACCCTAACCCCATCTCGCCAAATCGACCGTATGATCAATATCAACCATCATTTGTCCCCATCTAGAGCTATCTACTCTGATAGATTCATACCCAGTAGATCTGGTTCCAATTTTGCCCTATTTGATATCTCCCCTGTTTCCAATTCCCACTCTGATGGTCGTGAGGATACTTCTACTGCTTACGCTACGCTTCTTCGGACAGCTTTGTTTGGTCCTGATGCTGGAGTAATCCCTCCTGCTACACCTGAGAAGAGAAGCTCCCCAATGTGCCTTCCTAATCATAATATTTTTCGTTATAAGACCGAGACTAGGAGGTCAATGCATTCGCTTTCGCCTTTTGGGTTTGATGATGCCACTCCTGGGCTTAATCCTAGTCCTGTTAAGACTCCAAGGAAGGTTCCTCGATCGCCTTATAAGGTCTTGGATGCACCTGCTCTACAAGATGATTTTTATCTCAATCTTGTGGATTGGTCTTCGCATAATGTGCTGGCTGTGGGGTTGGGTAATTGTGTTTATCTCTGGAATGCTTGTAGTAGTAAGGTCACCAAGTTATGTGATTTGGGAATTGATGATAGTGTATGTTCAGTGGGGTGGGCACAGCGTGGAACTCATCTTGCTGTTGGCACTAGCAATGGGAAAGTCCAGATTTGGGATGCATCACGCTGTAAAAGGGTTAGGACCATGGAGGGCCATCGTTTACGAGTTGGGGCCTTAGCTTGGAGCTCATCTCTTTTATCGTCTGGTAGCCGGGACAAAAGTATTCTTCAAAGAGATATTCGGGCGCAGGATGATTTTGTGACTAAATTATCCGGCCATAAATCAGAGGTTTGTGGATTGAAATGGTCATATGATAATCGTGAATTGGCATCAGGAGGAAATGATAATAGATTATTTGTTTGGAATCAACATTCAACCCAACCAGTACTTAAATTTTATGAGCACACCGCTGCTGTAAAAGCTATTGCATGGTCGCCTCATCTTCATGGACTACTCGCATCAGGGGGTGGAACTGCAGATAGATGTATTCGTTTTTGGAACACAACGACCAATACACATTTGAGCTGCATGGACACTGGAAGTCAGGTGTGCAATCTGGCATGGTCCAAGAATGTTAATGAACTTGTTAGTACCCATGGGTTCTCCCAAAACCAAATTATAGTCTGGAGATATCCAACTATGTCCAAGTTGGCAACATTGACTGGCCATACTTTCAGAGTTCTGTATCTGGCCATATCTCCTGATGGACAGACCATTGTAACAGGTGCTGGTGATGAAACGCTAAGATTTTGGAATGTCTTCCCTTCACCTAAATCGCAGAACACGGACAGTGAAATCGGAGCATCCTTCCTGGGACGAACCACCATCCGTTAA 1515 44.75 MEDQALPQRTHQSSSTPSPSPSSSSSSSSSSLHLNLPPSMSRPSHSLETLTPSRQIDRMININHHLSPSRAIYSDRFIPSRSGSNFALFDISPVSNSHSDGREDTSTAYATLLRTALFGPDAGVIPPATPEKRSSPMCLPNHNIFRYKTETRRSMHSLSPFGFDDATPGLNPSPVKTPRKVPRSPYKVLDAPALQDDFYLNLVDWSSHNVLAVGLGNCVYLWNACSSKVTKLCDLGIDDSVCSVGWAQRGTHLAVGTSNGKVQIWDASRCKRVRTMEGHRLRVGALAWSSSLLSSGSRDKSILQRDIRAQDDFVTKLSGHKSEVCGLKWSYDNRELASGGNDNRLFVWNQHSTQPVLKFYEHTAAVKAIAWSPHLHGLLASGGGTADRCIRFWNTTTNTHLSCMDTGSQVCNLAWSKNVNELVSTHGFSQNQIIVWRYPTMSKLATLTGHTFRVLYLAISPDGQTIVTGAGDETLRFWNVFPSPKSQNTDSEIGASFLGRTTIR 504
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3280582 3283920 - ClG42_01g0033000.10 Clacu01g0330 239714

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g0330 504 SUPERFAMILY WD40 repeat-like 192 480 IPR036322 GO:0005515(InterPro)
Clacu01g0330 504 ProSiteProfiles Trp-Asp (WD) repeats profile. 447 480 IPR001680 GO:0005515(InterPro)
Clacu01g0330 504 ProSiteProfiles Trp-Asp (WD) repeats profile. 234 275 IPR001680 GO:0005515(InterPro)
Clacu01g0330 504 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 447 480 - -
Clacu01g0330 504 SMART WD40_4 226 266 IPR001680 GO:0005515(InterPro)
Clacu01g0330 504 SMART WD40_4 182 223 IPR001680 GO:0005515(InterPro)
Clacu01g0330 504 SMART WD40_4 352 394 IPR001680 GO:0005515(InterPro)
Clacu01g0330 504 SMART WD40_4 310 349 IPR001680 GO:0005515(InterPro)
Clacu01g0330 504 SMART WD40_4 440 479 IPR001680 GO:0005515(InterPro)
Clacu01g0330 504 SMART WD40_4 396 437 IPR001680 GO:0005515(InterPro)
Clacu01g0330 504 SMART WD40_4 269 306 IPR001680 GO:0005515(InterPro)
Clacu01g0330 504 ProSiteProfiles Trp-Asp (WD) repeats profile. 317 358 IPR001680 GO:0005515(InterPro)
Clacu01g0330 504 PANTHER CELL DIVISION CYCLE 20 CDC20 FIZZY -RELATED 44 490 IPR033010 GO:0005680(PANTHER)|GO:0010997(PANTHER)|GO:0010997(InterPro)|GO:0031145(PANTHER)|GO:0097027(InterPro)|GO:1904668(InterPro)|GO:1905786(PANTHER)|GO:1990757(PANTHER)
Clacu01g0330 504 MobiDBLite consensus disorder prediction 1 47 - -
Clacu01g0330 504 FunFam FIZZY-related 2 isoform 1 182 482 - -
Clacu01g0330 504 Pfam Anaphase-promoting complex subunit 4 WD40 domain 236 290 IPR024977 -
Clacu01g0330 504 Gene3D - 175 484 IPR015943 GO:0005515(InterPro)
Clacu01g0330 504 MobiDBLite consensus disorder prediction 7 47 - -
Clacu01g0330 504 ProSitePatterns Trp-Asp (WD) repeats signature. 466 480 IPR019775 -
Clacu01g0330 504 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 317 349 - -
Clacu01g0330 504 Pfam WD domain, G-beta repeat 314 349 IPR001680 GO:0005515(InterPro)
Clacu01g0330 504 Pfam WD domain, G-beta repeat 443 479 IPR001680 GO:0005515(InterPro)
Clacu01g0330 504 Pfam WD domain, G-beta repeat 354 394 IPR001680 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g0330 K03364 - - csv:101220762 975.311
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0330 Clacu-Chr1:3280582 Clacu10g1256 Clacu-Chr10:25425782 1.90E-96 dispersed
Clacu01g0330 Clacu-Chr1:3280582 Clacu09g2000 Clacu-Chr9:34864434 4.80E-164 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g425 . . . . . . . Bma14g00575 . . Cma02g01496 Cma15g01185 Car02g01258 Car15g01073 . . Cpe05g00294 . . . . . . . . . . . . . . . . Cone6ag0735 Cone9ag0739 . Csa05g00338 Chy09g01171 . Blo03g00379 . Bda07g00507 . . Bpe11g00694 . . . Cmo02g01537 Cmo15g01249 . . . . . Cpe13g00188 Bhi12g00333 . . Lac11g2159 Hepe06g1599 . Lcy12g1717 Cla01g00318 Cam01g0328 Cec01g0320 Cco01g0337 Clacu01g0330 Cmu01g0314 Cre09g2197 Lsi09g00323 . . Cme09g01704
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006983 1 1 1 1 1 1 4 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 37