Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g0332 ATGGCTTGTTCTTCTTTAGGCTTTAACTTCTTCTTGGTGGCTTTGTTTTTGGCCATCTCCACGAGATCAACGCTCGCTGTGTTCCGACCAAGCTCATGGAACCTCGCTCATGCCACCTTTTATGGTGATGAAACTGCCTCTGAGACCATGGGAGGAGGAGGTGATGTATCTTCAATGGCAGTGAAAGGAAGCAAAACAGGATGGATAACAATGAGCCATAATTGGGGAGCTTCATATCAAGCTTTTGCTTCATTGGGTGGTCAAGGCCTCTCTTTTAGAATCACTTCTTACACAACCAGAGAGACCCTTACTTTATGGAATGTCATTCCTTCAAATTGGCAAGTTGGGTTGACTTACAATTCTAATCTCAACTTCCATTGA 381 43.83 MACSSLGFNFFLVALFLAISTRSTLAVFRPSSWNLAHATFYGDETASETMGGGGDVSSMAVKGSKTGWITMSHNWGASYQAFASLGGQGLSFRITSYTTRETLTLWNVIPSNWQVGLTYNSNLNFH 126
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3313546 3315713 - ClG42_01g0033200.10 Clacu01g0332 239716

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g0332 126 Pfam Expansin C-terminal domain 49 110 IPR007117 -
Clacu01g0332 126 Gene3D - 44 126 IPR036749 -
Clacu01g0332 126 PRINTS Expansin signature 42 63 IPR002963 GO:0009664(InterPro)
Clacu01g0332 126 PRINTS Expansin signature 107 123 IPR002963 GO:0009664(InterPro)
Clacu01g0332 126 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 51 121 IPR007117 -
Clacu01g0332 126 PANTHER EXPANSIN-A15 51 121 IPR002963 GO:0009664(InterPro)
Clacu01g0332 126 SUPERFAMILY PHL pollen allergen 50 121 IPR036749 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g0332 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0332 Clacu-Chr1:3313546 Clacu07g0524 Clacu-Chr7:6700707 1.20E-15 dispersed
Clacu01g0332 Clacu-Chr1:3313546 Clacu10g0339 Clacu-Chr10:4289137 2.10E-36 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g427 . Blo03g00184 Bda06g00062 Bda08g00545 Bpe05g00621 Bpe07g00136 . . Cmo06g00753 . . Cma15g01184 . Car15g01071 Sed05g0853 . . Bhi11g00352 Tan01g1950 Cmetu06g0320 . . . . Cla10g00327 Cam10g0339 . . Clacu10g0339 Cmu10g1178 . Cone8ag0340 Cone12ag0334 Cone6ag0734 Cone9ag0738 Lsi07g01373 Csa05g00340 Chy09g01169 Cme06g02660 . . . . . . . Bma12g00112 . . Cmo15g01247 Cma06g00729 . Car06g00649 . Cpe08g00789 Cpe13g00190 Bhi12g00340 . . . Hepe06g1202 . . Cla01g00320 Cam01g0330 Cec01g0322 Cco01g0339 Clacu01g0332 Cmu01g0316 Cre09g2195 Lsi09g00326 Csa03g00346 Chy06g01979 Cme09g01702
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002453 2 3 2 2 2 2 2 2 2 2 1 2 2 2 2 2 2 4 2 2 2 2 2 2 2 2 2 2 2 1 61