Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g0356 ATGGATTCCCACTCCCTTCCCCCTCCTTTCCACACCCGTGATTTCCATCTCCAACCACACCAATTCCACAACAACAATAACAACAATTCCGAAGAAGAACATAGCACCACCACCACCCGCCTCAAGCGCGACCGCGATGACGACGACCACCACACCAACAACTCCAACCCCAACAGCGCTGGCGATGGTGTCCCCGGCTCCACCGACGGAGAAATCACTCGGCGTCCTAGAGGTAGACCTGCTGGATCCAAAAACAAACCCAAACCCCCCATTATTATTACTCGCGACAGCGCTAACGCCCTTCGTACCCACGTCATCGAAGTCACCGACGGCTGCGATATCGTCGACAGCGTCGCTACCTTCGCTCGTCGACGACAACGTGGCGTTTGTATTATGAGTGGTACTGGTACTGTCACCAACGTCACTCTACGTCAACCTGCTTCCCCCGGTGCAATTGTCAACTTACATGGCCGGTTCGAGATCTTATCTCTCGCCGGTTCTTTTCTTCCTCCTCCCGCTCCTCCAGCTGCTACTACTTTAACTATTTATCTCGCTGGCGGTCAAGGTCAAGTCGTCGGCGGTAGCGTCGTTGGTACTTTAATCGCTTCTGGTCCTGTCGTAATCATGGCTGCCTCCTTTAGTAACGCTGCTTATGAACGGCTTCCGTTGGAGGATGACGATCAGCCGCCGCTTCCGTCGCTACAAGGCGGCGGCGGAATTGGGTCACCGGATGAAGTTGGACAGTCTCAAACAGCGCAAACGGCGCATCATCAGCAGAATCAACAACAACAGCAACTTCTTAGCGACGGAAATGCGCCGTTATTTCACGGTTTGCCTCCGAATCTCTTGAATTCAATTCAAATGCCACCGTCTGAAGCAGCGTATTGGGCAACTGCCCGACCTCCGTACTAA 912 53.62 MDSHSLPPPFHTRDFHLQPHQFHNNNNNNSEEEHSTTTTRLKRDRDDDDHHTNNSNPNSAGDGVPGSTDGEITRRPRGRPAGSKNKPKPPIIITRDSANALRTHVIEVTDGCDIVDSVATFARRRQRGVCIMSGTGTVTNVTLRQPASPGAIVNLHGRFEILSLAGSFLPPPAPPAATTLTIYLAGGQGQVVGGSVVGTLIASGPVVIMAASFSNAAYERLPLEDDDQPPLPSLQGGGGIGSPDEVGQSQTAQTAHHQQNQQQQQLLSDGNAPLFHGLPPNLLNSIQMPPSEAAYWATARPPY 303
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3547641 3548552 - ClG42_01g0035600.10 Clacu01g0356 239740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g0356 303 CDD DUF296 102 168 IPR005175 -
Clacu01g0356 303 MobiDBLite consensus disorder prediction 244 270 - -
Clacu01g0356 303 MobiDBLite consensus disorder prediction 223 283 - -
Clacu01g0356 303 MobiDBLite consensus disorder prediction 1 93 - -
Clacu01g0356 303 ProSiteProfiles PPC domain profile profile. 98 237 IPR005175 -
Clacu01g0356 303 SUPERFAMILY AF0104/ALDC/Ptd012-like 98 229 - -
Clacu01g0356 303 FunFam AT-hook motif nuclear-localized protein 101 228 - -
Clacu01g0356 303 MobiDBLite consensus disorder prediction 19 34 - -
Clacu01g0356 303 Pfam Plants and Prokaryotes Conserved (PCC) domain 102 214 IPR005175 -
Clacu01g0356 303 PIRSF ESCAROLA 12 303 IPR014476 GO:0003680(InterPro)
Clacu01g0356 303 MobiDBLite consensus disorder prediction 35 53 - -
Clacu01g0356 303 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 30 303 IPR014476 GO:0003680(PANTHER)|GO:0003680(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0010228(PANTHER)
Clacu01g0356 303 Gene3D - 101 229 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0356 Clacu-Chr1:3547641 Clacu06g0033 Clacu-Chr6:547548 9.40E-75 dispersed
Clacu01g0356 Clacu-Chr1:3547641 Clacu01g0359 Clacu-Chr1:3613399 9.60E-19 proximal
Clacu06g1544 Clacu-Chr6:26368922 Clacu01g0356 Clacu-Chr1:3547641 7.60E-63 transposed
Clacu01g0356 Clacu-Chr1:3547641 Clacu05g0249 Clacu-Chr5:2167340 2.20E-68 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g0356 - - - 0.0