Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g0359 ATGGAGGGAAGGGATGGTGGTGGCGCAAGTAGTGGGGTTACTGTGGTAGGATCAGATGCTCCGTCGGAGTACAAAATAGCTCCGAGGACCTCCGATAACCCACCGCAGACTGGTGGATCAACGCCGCCGCCGGCGACTCAATCAACTTCGACGCCGTCGGCTTCAGCTCAAGTAACTGCGCAGCCTCCGCCGCCTACGGCGGCCTCCTCAGTACCGGGAAAGAAGAAAAGAGGGAGACCCAGAAAATATGGACCCGATGGCTCTGTTTCTATGGCTCTGTCTCCCAAGCCGATATCGTCATCAGTGCCGCCGCCGGTGATCGACTTCTCGACGGAGAAGAAGGGGAAAGTACGGCCGGCGAGCGCTGTGAGTAAAAGCAAGTTCGAAGTGGATAATTTAGGCGACTGGGTTCCATGTTCTGTTGGTGGAAATTTTACACCTCATATCATCACTGTCAATGCAGGGGAGGATGTCACCATGAAGATTATATCCTTTTCTCAACAAGGGCCTCGAGCCATATGCATTTTATCTGCGAACGGTGTGATCTCAAGTGTCACTCTTCGTCAGCCTGATTCATCTGGAGGAACACTAACTTATGAGGGACGCTTTGAAATACTTTCCTTGTCTGGCTCATTCATGCCTAGTGACAACGGAGGAACTAGAAGTAGATCTGGTGGAATGAGTGTTTCCTTAGCAAGTCCAGATGGGCGTGTCGTAGGCGGTGGAGTAGCTGGTCTATTAGTAGCTGCAAGTCCTGTTCAGGTTGTAGTAGGGAGTTTTCTATCTGGAAATCAACACGAGCAGAAACCGAAAAAGCCAAAACATGATACTATTTCACCGGCCCCGCCAACTGCTGCCATTCCAATATCTTGCGTTGATCCTAAGTCCAACCTCTCACCTTCCAGTTCCTTTCGTGGCGATAACTGGTCAATGCTGCCAACTGATTCAAGGAATAAGTCAACTGATATCAATGTATCCCTACCCAGTGCTTGA 993 50.45 MEGRDGGGASSGVTVVGSDAPSEYKIAPRTSDNPPQTGGSTPPPATQSTSTPSASAQVTAQPPPPTAASSVPGKKKRGRPRKYGPDGSVSMALSPKPISSSVPPPVIDFSTEKKGKVRPASAVSKSKFEVDNLGDWVPCSVGGNFTPHIITVNAGEDVTMKIISFSQQGPRAICILSANGVISSVTLRQPDSSGGTLTYEGRFEILSLSGSFMPSDNGGTRSRSGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFLSGNQHEQKPKKPKHDTISPAPPTAAIPISCVDPKSNLSPSSSFRGDNWSMLPTDSRNKSTDINVSLPSA 330
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3613399 3617038 + ClG42_01g0035900.10 Clacu01g0359 239743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g0359 330 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 45 309 IPR039605 GO:0003680(InterPro)
Clacu01g0359 330 MobiDBLite consensus disorder prediction 1 113 - -
Clacu01g0359 330 MobiDBLite consensus disorder prediction 29 64 - -
Clacu01g0359 330 SUPERFAMILY AF0104/ALDC/Ptd012-like 144 265 - -
Clacu01g0359 330 MobiDBLite consensus disorder prediction 264 330 - -
Clacu01g0359 330 Gene3D - 147 276 - -
Clacu01g0359 330 MobiDBLite consensus disorder prediction 294 330 - -
Clacu01g0359 330 FunFam AT-hook motif nuclear-localized protein 1-like 147 278 - -
Clacu01g0359 330 Pfam Plants and Prokaryotes Conserved (PCC) domain 147 260 IPR005175 -
Clacu01g0359 330 CDD DUF296 146 237 IPR005175 -
Clacu01g0359 330 ProSiteProfiles PPC domain profile profile. 142 281 IPR005175 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0359 Clacu-Chr1:3613399 Clacu05g0256 Clacu-Chr5:2232922 1.10E-89 dispersed
Clacu01g0356 Clacu-Chr1:3547641 Clacu01g0359 Clacu-Chr1:3613399 9.60E-19 proximal
Clacu04g1025 Clacu-Chr4:24481998 Clacu01g0359 Clacu-Chr1:3613399 2.60E-14 transposed
Clacu11g0191 Clacu-Chr11:1608732 Clacu01g0359 Clacu-Chr1:3613399 1.30E-106 transposed
Clacu01g0359 Clacu-Chr1:3613399 Clacu05g0882 Clacu-Chr5:7714172 1.50E-70 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g0359 - - - 0.0