Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g0378 ATGGCAGAGATGATGAAGAACCCAAAAGTTGCAAAGAAAGCCATGGAAGAACTAGTAGCCGTGGTTGGTGAACAGAATATAGTTGAAGAATCCCATATACAGAGTTTGTCATATCTGAAAGCGGTAATGAAAGAAACCTTGCGTCTGCATCCAATTTTGCCGCTGCTAGTGCCACACTGCCCCAGCCAGACCACCGTCATCTCCAATTACACAATCCCAAAGGGCTCTCGAGTGTTCGTCAACGTTTGGGCCATTCACCGAGACCCCAATTATTGGGAGAATCCATTGGAGTTCGACCCAGAGAGGTTCTTGAATGGTAAATTTGATTTCAGCGGGAGTGATTTTCGTTACATTCCATTTGGGTCCGGCAGAAGAAACTGTGCAGGGATAGCCATGGCGGAAAGAACAGTAATGTATTTGCTTTCCACACTTTTGCATTGCTTCGATTGGAAATTGAAGGAAGGTGAGAAGCTGGAAATTGAAGAGAAATTTGGGATTGTTTTAAAGATGAAGAAGCCTCTTCTTCTCATCCCAACACCTAGATTATCAGACTCCTCTTTGTATCAGTAA 570 43.86 MAEMMKNPKVAKKAMEELVAVVGEQNIVEESHIQSLSYLKAVMKETLRLHPILPLLVPHCPSQTTVISNYTIPKGSRVFVNVWAIHRDPNYWENPLEFDPERFLNGKFDFSGSDFRYIPFGSGRRNCAGIAMAERTVMYLLSTLLHCFDWKLKEGEKLEIEEKFGIVLKMKKPLLLIPTPRLSDSSLYQ 189
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3801810 3802379 - ClG42_01g0037800.10 Clacu01g0378 239762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g0378 189 Gene3D Cytochrome P450 1 176 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Clacu01g0378 189 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 120 129 IPR017972 GO:0005506(InterPro)|GO:0016705(InterPro)
Clacu01g0378 189 SUPERFAMILY Cytochrome P450 1 181 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Clacu01g0378 189 PRINTS E-class P450 group I signature 40 58 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Clacu01g0378 189 PRINTS E-class P450 group I signature 127 150 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Clacu01g0378 189 PRINTS E-class P450 group I signature 81 105 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Clacu01g0378 189 PRINTS E-class P450 group I signature 117 127 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Clacu01g0378 189 FunFam Predicted protein 1 176 - -
Clacu01g0378 189 PANTHER OS08G0547900 PROTEIN 1 189 - -
Clacu01g0378 189 PRINTS P450 superfamily signature 127 138 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Clacu01g0378 189 PRINTS P450 superfamily signature 6 19 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Clacu01g0378 189 PRINTS P450 superfamily signature 118 127 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Clacu01g0378 189 PRINTS P450 superfamily signature 41 52 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Clacu01g0378 189 Pfam Cytochrome P450 2 175 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0374 Clacu-Chr1:3784881 Clacu01g0378 Clacu-Chr1:3801810 4.00E-11 dispersed
Clacu01g0378 Clacu-Chr1:3801810 Clacu07g0142 Clacu-Chr7:1806730 5.40E-44 dispersed
Clacu01g0377 Clacu-Chr1:3795669 Clacu01g0378 Clacu-Chr1:3801810 4.40E-88 tandem
Clacu01g0378 Clacu-Chr1:3801810 Clacu01g0379 Clacu-Chr1:3803705 6.50E-90 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g0378 - - - 0.0