Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g0387 ATGTCATCTTCTTCATCTTCTTCTTCTCCTACTTCTACTACTACTGCTACCACTACGACTACGTTATCTCAACAACAACACCTGCAACAGCAGCTGGACCACCACCTTCCTTCTCCTGAGCAACTCTGTTATGTCCATTGCAATATTTGCGACACTGTCCTTGCGGTTAGTGTTCCTTGTTGTAGTTTGTTTAAAACTGTGACAGTTCGATGTGGACACTGCACGAATCTGCTTCCTGTCAACATGCGTGGCCTTCTTCTGCCTTCACCTAATCAATTTCATCAGCTTGGCCACTCTTTCTTTTCTCCTAATTCTCATAACATTCTCGAAAATATGGCTACACCAAATTCCAATTATCTTATCAACCAGTTTGGAGCTACTACTAACAATTTTGGAATGCCATCTCGAGGAGTTACTGATGAACTCCCTAGGCCACCAGCCATTAACAGACCTCCGGAGAAGAGACAGAGAGTGCCTTCTGCATACAACCGCTTCATCAAGGACGAGATCCAACGCATCAAGTCTGTGAATCCCGATATATCCCACAGAGAAGCCTTCAGTGCCGCTGCTAAGAATTGGGCCCACTTTCCACACATTCACTTTGGTCTTATGCCCGACCAGACAGTGAAGAAGACAAATATCCGCCAGCAGGAAGGAGATACTCAGAATGTTCTGATGAAAGACAATGGATTCTATGCCTCAGCCAATGTTGGTGTCTCCCACTTCTAA 729 44.99 MSSSSSSSSPTSTTTATTTTTLSQQQHLQQQLDHHLPSPEQLCYVHCNICDTVLAVSVPCCSLFKTVTVRCGHCTNLLPVNMRGLLLPSPNQFHQLGHSFFSPNSHNILENMATPNSNYLINQFGATTNNFGMPSRGVTDELPRPPAINRPPEKRQRVPSAYNRFIKDEIQRIKSVNPDISHREAFSAAAKNWAHFPHIHFGLMPDQTVKKTNIRQQEGDTQNVLMKDNGFYASANVGVSHF 242
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 3915633 3918177 - ClG42_01g0038700.10 Clacu01g0387 239771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g0387 242 MobiDBLite consensus disorder prediction 1 31 - -
Clacu01g0387 242 SUPERFAMILY HMG-box 148 196 IPR036910 -
Clacu01g0387 242 CDD HMG-box_SF 157 193 - -
Clacu01g0387 242 PANTHER PROTEIN YABBY 6-RELATED 39 212 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0009944(PANTHER)|GO:0010154(PANTHER)|GO:0010158(PANTHER)|GO:0045165(PANTHER)|GO:1902183(PANTHER)|GO:2000024(PANTHER)
Clacu01g0387 242 Pfam YABBY protein 39 203 IPR006780 GO:0007275(InterPro)
Clacu01g0387 242 Gene3D High mobility group box domain 146 211 IPR036910 -
Clacu01g0387 242 FunFam Axial regulator YABBY 148 219 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0387 Clacu-Chr1:3915633 Clacu02g2303 Clacu-Chr2:36101771 5.30E-44 dispersed
Clacu05g2559 Clacu-Chr5:33562026 Clacu01g0387 Clacu-Chr1:3915633 7.30E-23 transposed
Clacu05g2577 Clacu-Chr5:33676055 Clacu01g0387 Clacu-Chr1:3915633 1.30E-22 transposed
Clacu01g0387 Clacu-Chr1:3915633 Clacu10g0295 Clacu-Chr10:3849611 1.60E-61 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46957 PF04690 YABBY 2.90E-70 CL0114 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g0387 K25796 - csv:101214748 431.409