Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g0395 ATGGCGTGGGTCAAATCCCTTCAGTGCAAATCCAGAGCCTTCGAAGACGTTTATCATCCAACCCCTAAAAATCTAATCCCCAGTGCTAGTTGCCGGAAAAGCGTTCAGAGTCTCAAAGACGTCGTCGAAACCACCAAATCGAAGCACAAGAAGCCCAAGCACTCGCCGCCGGAGAAGAAACCGGTTTCCAAAAACCCAAGACTCGTGAAATCGGAACCCGGTTCGACTCCCTGCATCCGGCCTAGAACGAGCGTTTCGTCCCGTCCGTTAATCAGGGCTGACGATCTTATTTTTCCGGCGGTGTCGGAGTTGCCGGAAGGGCACCATTCCCGGAGCGTGGTTGAGATAATCTTTCACACGAGCTGGAGCCCGAAGGCGTTTACGGGTCAGGTCGAAATGATTTTCAAGGTCCAGAACGGGTCCAAGACGGTGGCTCGGTTTGAAGAGTATCGCGAAATGGTTAAGGCTAAGGCGGCGATGGGATGCCCCGCCGACGAGGAGAATGCCCGTTGTGTCGCCGATGGGAACGAGGTCATGAGGTTTCACTGCATGGGTCCCACGTCCGACTCAGCGAAATACGACGGATACGGCGGCGCGTGGAGTTTCCCAGGGGTACGGGGGTCGTCGGCGGCGGCAGCGATTTGTACGTTCGCCGGAAGCGGGGTGGCCCATGAGAACGCCGGCGGCGGAAGAGGGAGAAGGGCGATGTTAGTATGTCGAGTCATCGCCGGTCGGGTTTCGAAACAGGTGGTGAAACCCGACCCGTTTCTAGAAGGCCGAGTTGGGCTCGACTCAGTGAGTGGGGATAATGGCGAGTTACTCGTGTTCGACTCGCGTGCGGTTCTCCCTTGTTTCCTCATCATCTACAAATTGTAA 876 56.16 MAWVKSLQCKSRAFEDVYHPTPKNLIPSASCRKSVQSLKDVVETTKSKHKKPKHSPPEKKPVSKNPRLVKSEPGSTPCIRPRTSVSSRPLIRADDLIFPAVSELPEGHHSRSVVEIIFHTSWSPKAFTGQVEMIFKVQNGSKTVARFEEYREMVKAKAAMGCPADEENARCVADGNEVMRFHCMGPTSDSAKYDGYGGAWSFPGVRGSSAAAAICTFAGSGVAHENAGGGRGRRAMLVCRVIAGRVSKQVVKPDPFLEGRVGLDSVSGDNGELLVFDSRAVLPCFLIIYKL 291
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4016649 4017524 - ClG42_01g0039500.10 Clacu01g0395 239779

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g0395 291 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 4 290 - -
Clacu01g0395 291 SUPERFAMILY ADP-ribosylation 101 290 - -
Clacu01g0395 291 Gene3D - 100 290 - -
Clacu01g0395 291 MobiDBLite consensus disorder prediction 27 41 - -
Clacu01g0395 291 MobiDBLite consensus disorder prediction 22 84 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g0395 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0395 Clacu-Chr1:4016649 Clacu02g2019 Clacu-Chr2:33609895 1.70E-28 dispersed
Clacu01g0395 Clacu-Chr1:4016649 Clacu10g0612 Clacu-Chr10:8293674 1.20E-23 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g510 . . . . . . . Bma14g00541 . . . Cma15g01142 . Car15g01038 . . . . . . . . . . . . . . . . . . . . . . Csa05g00403 Chy09g01110 . Blo03g00414 Blo19g00233 Bda07g00004 Bda09g00094 Bpe08g01435 Bpe11g00264 . . . . Cmo15g01203 . . . . . . Bhi12g00419 . . Lac11g2261 Hepe06g1658 . Lcy12g1806 Cla01g00376 Cam01g0395 Cec01g0387 Cco01g0407 Clacu01g0395 Cmu01g0376 Cre09g2135 Lsi09g00407 . . Cme09g01639
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004829 3 1 2 1 2 1 2 1 1 2 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 41