Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g0417 ATGGCATTCCTTTTTCCCTCATTTTTCTTCTCCACTTTCTTTCTCCTATGCTTTTCCGCTGCCGCCAAGCACCGCCACCACTGGGTCGAACCCACCGGACACCGCCTCATCAAAGTGAATGTTAACGGCGGCTCCGATGAGTTTCTCTCCGTGCAAGCCGCCGTGGATGCAGTTCCCGATTACAATACCGTCAACACCGTCATCCGAATTAGCCCCGGATATTACGTGGAGAAGGTGGTGGTGCCGGCGACGAAGCCGTATATAACATTTGAAGGAGGAGGAAAAGAGACGACGGTGATAGAATGGCACGACCGGGCAGGTGACCGTGGTCCCAGCGGGCAGCAACTCCGTACTTATAGAACAGCCTCCGTTACCGTTTTTGCTAATTACTTCTCTGCCCGAAACATCAGCTTCAAGAATACGGCACCGGCGCCGCTGCCCGGAATGCAAGGGTGGCAGGCGGCGGCGTTCCGAATCTCCGGCGACAAAGCCTACTTTTCCGGCTGCGGATTCTACGGAGCACAAGATACGCTTTGCGACGACGCCGGCCGCCATTACTTCAAAGAATGCTACATTGAAGGCTCCATAGACTTCATCTTTGGAAATGGGCGTTCCATGTATAAGGATTGTGAGCTGCACTCAATCGCCACCCGGTTCGGTTCCATAGCGGCCCAAGATAGAAACTCGCCGTCTGAGAAGACCGGGTTTGCTTTTCTCCGGTGCAAGGTGACCGGTTCAGGACCCGTGTACGTGGGCCGAGCCATGGGCCAGTACTCCAGAATCGTCTATGCGTATACTTACTTTGATGATGTGGTGGCCCACGGTGGATGGGATGACTGGGACCACGTCAGCAACAAAAACAAGACTGTATTTTTTGGAGTATACAAGTGCTGGGGGCCAGGGGCAAGTAAAGTAAAGGGAGTATCATGGGCTAGAGAATTGGAGTATGAAGAGGCCCATCCATTTCTTGCCAAAAGCTTTGTCAATGGCAGACACTGGATTGCACCCTCTGATGCTTAG 1020 53.14 MAFLFPSFFFSTFFLLCFSAAAKHRHHWVEPTGHRLIKVNVNGGSDEFLSVQAAVDAVPDYNTVNTVIRISPGYYVEKVVVPATKPYITFEGGGKETTVIEWHDRAGDRGPSGQQLRTYRTASVTVFANYFSARNISFKNTAPAPLPGMQGWQAAAFRISGDKAYFSGCGFYGAQDTLCDDAGRHYFKECYIEGSIDFIFGNGRSMYKDCELHSIATRFGSIAAQDRNSPSEKTGFAFLRCKVTGSGPVYVGRAMGQYSRIVYAYTYFDDVVAHGGWDDWDHVSNKNKTVFFGVYKCWGPGASKVKGVSWARELEYEEAHPFLAKSFVNGRHWIAPSDA 339
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4216802 4223526 + ClG42_01g0041700.10 Clacu01g0417 239801
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g0417 339 Pfam Pectinesterase 42 330 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Clacu01g0417 339 FunFam Pectinesterase 32 336 - -
Clacu01g0417 339 SUPERFAMILY Pectin lyase-like 37 336 IPR011050 -
Clacu01g0417 339 Gene3D - 35 338 IPR012334 -
Clacu01g0417 339 ProSitePatterns Pectinesterase signature 2. 192 201 IPR033131 -
Clacu01g0417 339 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 14 335 - GO:0030599(PANTHER)|GO:0045490(PANTHER)|GO:0052689(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0417 Clacu-Chr1:4216802 Clacu03g1647 Clacu-Chr3:30105813 1.20E-86 dispersed
Clacu01g0417 Clacu-Chr1:4216802 Clacu11g0580 Clacu-Chr11:5496050 9.60E-68 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g0417 - - - 0.0