Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g0420 ATGATGATGGGAGGAATGGAAGATGCGGTGGTGATCGGAGGATTGATGGCGGTGCAGTTCATTTACGCCGGAAATTCGGTGTTGTTGAGTTATTTGATGTCGTTTGGGCTTAATCCGTTCACCATCGTCGTTTGTTTTGCCTCTACAACTTCTCTGTTTCTCTCTCCTCTCGCTGTTTATTTTGAAAGGAGCACATGGCCCAAAAAATTGAGTTTTAAGTTGACGCTTCAACTTGTCCTCATCTCCTTTGGCGGAGTAACTTTGTTCCAAACTCTGCTATTAGAAGGGATAAAGTTGACCTCCCCAGCCATGGCTACTGCCATGCCAAATCTGGCTCCTGGTCTCATCTTTATCACTGCTTGGTGTTGTAGATTAGAGAGAGTGAAACTTAGTTGTGTGTACAGCAAAGTAAAGATTTTGGGGACATTGCTTTGTGTAGTAGGTGCTCTAACAATGAGCATAATGCAAAGCACTATTACAATACCAGCAAAAGATCAACTAATTACAACATCTCAACCTACCATTGTACTCTTCAATAAGGAAAAGATTGTTGGTTGTTTGTACTTAATGCTGGCTGTCTTCATACTATCAACCAATGTTGTTTTGCAGGCAAAAGCCCTTGGTGAATTACCAGCTCCAATGTCATTGAGTGCTGTAACATCCTTCATTGGAGTGTTCACCACTGCAGCTGTAATGCTACTCCAAAATCACAACTTACAAACAGATTGGTCAATTCTCAACATCAAGGATTTACTTTCCTATTCTCTTTTTGGAGGAATAGTGAGTGGCATAAGCTTGAGCTTCAATGGATGGGCAATGAAGAAGAGAGGCCCAGTTTTGGTGTCAATTTTCAGTCCCATTGTAACTGTTTTCTCTCTCATTCTCTCTGTCTTCACCTTAGGAGACACTATTTCTATTGGAAGCCTTGCTGGTATGTTCTTGATGTTCTGTGGGCTCTACTTTGTGCTTTGGGCAAAAGGAAAAGAAGGTTATTGTGATGGAAGTGGCTATCAAAGTGATGACTTTGATCTTGAGAAACCTTTACTCTCTTGA 1053 41.41 MMMGGMEDAVVIGGLMAVQFIYAGNSVLLSYLMSFGLNPFTIVVCFASTTSLFLSPLAVYFERSTWPKKLSFKLTLQLVLISFGGVTLFQTLLLEGIKLTSPAMATAMPNLAPGLIFITAWCCRLERVKLSCVYSKVKILGTLLCVVGALTMSIMQSTITIPAKDQLITTSQPTIVLFNKEKIVGCLYLMLAVFILSTNVVLQAKALGELPAPMSLSAVTSFIGVFTTAAVMLLQNHNLQTDWSILNIKDLLSYSLFGGIVSGISLSFNGWAMKKRGPVLVSIFSPIVTVFSLILSVFTLGDTISIGSLAGMFLMFCGLYFVLWAKGKEGYCDGSGYQSDDFDLEKPLLS 350
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4255165 4262193 - ClG42_01g0042000.10 Clacu01g0420 239804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g0420 350 Pfam EamA-like transporter family 185 323 IPR000620 GO:0016020(InterPro)
Clacu01g0420 350 PANTHER WAT1-RELATED PROTEIN 16 330 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
Clacu01g0420 350 SUPERFAMILY Multidrug resistance efflux transporter EmrE 243 327 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0420 Clacu-Chr1:4255165 Clacu02g1517 Clacu-Chr2:28630346 1.40E-34 dispersed
Clacu01g0420 Clacu-Chr1:4255165 Clacu10g0256 Clacu-Chr10:3128918 4.50E-105 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g0420 - - - 0.0