Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g0424 ATGGTGAAGTTGGCCGTGGGCTCCGCCGCCGATTCATTCAGTGCGGCCTCTCTTAAAGCCTATCTCTCTGAATTCATCGCCACTCTCCTTTTCGTCTTCGCCGGCGTCGGCTCCGCCATCGCCTACGGTAAGTTGACGTCCGATGCGGCGTTGGATGCACCAGGTTTGGTGGCAGTGGCAGTGGCTCACGCATTTGCATTGTTCGTCGGTGTGTCGATGGCAGCGAACATCTCCGGCGGCCACCTAAACCCGGCGGTGACCTTTGGGTTGGCCATCGGCGGCAACATCACCATCTTGACCGGCTTGTTCTACTGGATCGCCCAATTGCTTGGCTCCATTGTTGCCTGCCTCCTCCTTCAATTCGTTACCAACGGCAAGAGTATTCCGACCCACGGCGTGGCGGCGGGACTGGGAGCAATTGAAGGCGTAGTATTCGAGATAGTAATCACCTTCGGTCTGGTGTACACAGTTTACGCTACAGCCGCAGACCCCAAAAAGGGTTCTCTTGGAACGATTGCCCCAATTGCTATCGGCTTCATTGTGGGTGCCAACATTCTCGCCGCCGGCCCATTTAGCGGTGGGTCCATGAACCCGGCCCGTTCCTTCGGCCCAGCTGTTGTCAGCGGAGACTTCTCTCAGATTTGGATCTATTGGGTCGGCCCACTTATTGGTGGTGGGCTTGCTGGCCTTATCTATGGCGACGTCTTTATTTCCTCTTATGCCCCTGTTCCTGTCTCTGGTGATTATGCTTAA 753 55.91 MVKLAVGSAADSFSAASLKAYLSEFIATLLFVFAGVGSAIAYGKLTSDAALDAPGLVAVAVAHAFALFVGVSMAANISGGHLNPAVTFGLAIGGNITILTGLFYWIAQLLGSIVACLLLQFVTNGKSIPTHGVAAGLGAIEGVVFEIVITFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGDFSQIWIYWVGPLIGGGLAGLIYGDVFISSYAPVPVSGDYA 250
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4294662 4297320 + ClG42_01g0042400.10 Clacu01g0424 239808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g0424 250 PANTHER AQUAPORIN-8 3 239 IPR034294 GO:0006833(PANTHER)|GO:0009705(PANTHER)|GO:0015250(PANTHER)|GO:0016020(PANTHER)
Clacu01g0424 250 ProSitePatterns MIP family signature. 81 89 IPR022357 -
Clacu01g0424 250 CDD MIP 19 232 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu01g0424 250 Gene3D Glycerol uptake facilitator protein. 2 243 IPR023271 -
Clacu01g0424 250 NCBIfam MIP family channel protein 23 232 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu01g0424 250 Pfam Major intrinsic protein 14 232 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu01g0424 250 FunFam Probable aquaporin TIP1-1 2 248 - -
Clacu01g0424 250 SUPERFAMILY Aquaporin-like 16 239 IPR023271 -
Clacu01g0424 250 PRINTS Major intrinsic protein family signature 178 200 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu01g0424 250 PRINTS Major intrinsic protein family signature 100 119 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu01g0424 250 PRINTS Major intrinsic protein family signature 19 38 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu01g0424 250 PRINTS Major intrinsic protein family signature 145 163 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu01g0424 250 PRINTS Major intrinsic protein family signature 215 235 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu01g0424 250 PRINTS Major intrinsic protein family signature 63 87 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0424 Clacu-Chr1:4294662 Clacu09g0184 Clacu-Chr9:1767788 6.50E-98 dispersed
Clacu01g0424 Clacu-Chr1:4294662 Clacu04g0996 Clacu-Chr4:24122564 1.00E-79 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g0424 K09873 - csv:101203925 465.307