Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g0451 ATGTACCAGAGCACTAAAACAGAGTCCGATTTTGGTTTTCTAGACCCAATTCGCCGCCATTTATTGGGCGAATCGGAGATTTCCGCCGCCAACGCCGCCGCTCCCGGCGGCCGACCCACTCCCGTTTTCAGTCGGAGTGGTAGTTTCAGTAGCTTAATTCCATGTCTTGAAGACAATTGGGGCGATTTGCCTCTCAAGGTTGACGACTCGGAAGATATGATGCTTGCCGCCGTTCTCCGAGATGCCGTCGGTGCCGGATGGGTTCCGTCGCTTGGAAGCTGCGATTTTGGGTTTTCGACGGTGAAATCAGAGCCGGAGGTGCTTCCGGTGAGTTACCCGGTGGTGCTACCGAATGTGACGGTAAAGCCGACGGTGGTACCTGCGAAAGGGAAGCATTATAGAGGAGTGCGGCAACGGCCGTGGGGGAAATTCGCAGCCGAGATTCGAGACCCGGCGAAAAATGGTGCTAGAGTTTGGCTTGGAACTTATGAGACGGCAGAGGATGCGGCGTTAGCTTATGATCGAGCGGCTTATCGAATGCGAGGCTCAAGGGCTCTGCTAAATTTTCCCCTCCGTGTCAACTCCGGCGAGCCCGAACCGGTTAGGGTCACGTCGAAGCGATCGTCACCGGAGGTTTCATCGTCGCCGAAGCGGCGGAAGAAAGTCGGCTCCACCGTAGAAGGTGGAGGAGTACAAGTGGAGCAACAAGTGGCAAGCTTTACACATGGAGGGCAGCTGTTTGTAAGCCAATGCCAACATTTAGCCAATAATTATAAAAAGCTCTTTTAA 789 53.99 MYQSTKTESDFGFLDPIRRHLLGESEISAANAAAPGGRPTPVFSRSGSFSSLIPCLEDNWGDLPLKVDDSEDMMLAAVLRDAVGAGWVPSLGSCDFGFSTVKSEPEVLPVSYPVVLPNVTVKPTVVPAKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEDAALAYDRAAYRMRGSRALLNFPLRVNSGEPEPVRVTSKRSSPEVSSSPKRRKKVGSTVEGGGVQVEQQVASFTHGGQLFVSQCQHLANNYKKLF 262
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4496963 4497751 + ClG42_01g0045100.10 Clacu01g0451 239835
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g0451 262 Gene3D AP2/ERF domain 131 193 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu01g0451 262 PRINTS Ethylene responsive element binding protein signature 133 144 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu01g0451 262 PRINTS Ethylene responsive element binding protein signature 156 172 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu01g0451 262 SMART rav1_2 132 196 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu01g0451 262 ProSiteProfiles AP2/ERF domain profile. 132 190 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu01g0451 262 CDD AP2 131 190 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu01g0451 262 MobiDBLite consensus disorder prediction 197 228 - -
Clacu01g0451 262 SUPERFAMILY DNA-binding domain 132 192 IPR016177 GO:0003677(InterPro)
Clacu01g0451 262 PANTHER DNA-BINDING DOMAIN 115 219 IPR044808 GO:0003700(InterPro)|GO:0009873(InterPro)
Clacu01g0451 262 Pfam AP2 domain 132 183 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu01g0451 262 FunFam Ethylene-responsive transcription factor 2 131 191 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0451 Clacu-Chr1:4496963 Clacu07g1697 Clacu-Chr7:31764969 2.70E-33 dispersed
Clacu11g1969 Clacu-Chr11:30637667 Clacu01g0451 Clacu-Chr1:4496963 2.30E-16 dispersed
Clacu01g0451 Clacu-Chr1:4496963 Clacu10g0237 Clacu-Chr10:2864190 3.30E-84 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46962 PF00847 AP2 9.90E-15 CL0081 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g0451 K09286 - csv:101221583 428.713