Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g0456 ATGGGTCTTCCAACTCTCACCGGATTGTTGAAAACTGTCGCCGGACAGTTCCCTGATCGGAGAGCCTTATCCGTATCTGGAAAGTTCGATCTCTCACATTCCCGCCTCCAACACCTCGTTGATTCCGCCGCCTCAAAACTCGCCGCCGCCGGTGTCAAACCCGGAGACGTCGTTGCCCTTGTCTTTCCAAACACCGTCGAGTTTGTGATCATGTTTTTGGCTGTGATCCGAGCTCGAGCCACGGCGGCGCCACTCAACGCCGCCTACACGGCGGAGGAGTTCGAATTTTACTTATCGGACTCCGAATCGAAGCTTTTAGTAACCTCTATAGAAGGCAACGGCCCCGCTGAAACGGCAGCGTCTAAACTCAACATCCAACACATGACCGCTGCGCTTCCCGATGCACATGCCGAGTTGGTTCTCTCCTTCAGTCCGTCCAACTCGAACGATTTTGACTCCGACTCAGTTCTTGAAATCGTCAATGACGGATCCGACGTGGCATTATTCCTCCACACGTCAGGCACCACGAGCCGCCCAAAAGGCGTCCCATTGACTCAGTTTAATTTGGCCTCTTCAGTTAACAACATTAAATCGGTTTACCAACTCAATGATTCCGACTCGACCGTCATTGTCCTTCCTTTGTTCCACGTCCACGGTTTAATGGCTGGATTACTCAGTTCACTCGCTGCCGGAGCCGCCGTGGCTCTACCGGCTGCCGGGAGATTCTCGGCGTCGACATTTTGGGCCGACATGGTCCAATACAACGCCACGTGGTACACTGCCGTCCCTACGATCCACCAGATCATACTGGATCGGCACTCGACTAAACCGGAAACGGTTTACCCGAAGCTCCGGTTCATTAGAAGCTGCAGTGCGTCGTTGGCTCCGGCTATCTTGAACCGGTTGGAGGAGGCGTTTGGAGCGCCGGTTCTGGAGGCGTACGCGATGACGGAAGCGACACATCTGATGTCGTCGAACCCACTGCCGGAAAACGGTCCGCACAAGGCCGGGTCGGTGGGGAAACCGGTGGGTCTAGAAATGGTGATATTGGATGAAAACGGCGTCGTTCAGGAGGCGACTGTGAAAGGTGAAGTTTGTATTAAGGGTCCGAATGTGACGAAGGGATATAAAAGCAATCCGGTAGCGAACGAGGAAGCGTTCCGGTACGGGTGGTTCCACACTGGAGATATTGGGTACTTCGATTCTGATGGGTATTTACATCTCGTCGGTCGGATCAAGGAGCTGATCAACCGTGGAGGGGAAAAGATATCGCCGATTGAAGTGGACGCCGTGCTGTTGGCTCATCCGGACGTGGCTCAAGCTGTCGCATTTGGAGTTCCCGACGACAAGTATGGAGAGGAGATAAACTGCGCAATAATCCGAAGAGAAGGATCAAAGATTGGAGAGGAAGATGTATTGAGCTTCTGCAGGAACAATTTAGCTGCTTTCAAAGTCCCTAAGAAAGTCTTTCTCACCGATTCACTCCCCAAAACTGCTTCCGGCAAAATACAACGTCGAATCGTAGCCGCTCATTTCCTTCAACAAAAATCATGA 1554 52.57 MGLPTLTGLLKTVAGQFPDRRALSVSGKFDLSHSRLQHLVDSAASKLAAAGVKPGDVVALVFPNTVEFVIMFLAVIRARATAAPLNAAYTAEEFEFYLSDSESKLLVTSIEGNGPAETAASKLNIQHMTAALPDAHAELVLSFSPSNSNDFDSDSVLEIVNDGSDVALFLHTSGTTSRPKGVPLTQFNLASSVNNIKSVYQLNDSDSTVIVLPLFHVHGLMAGLLSSLAAGAAVALPAAGRFSASTFWADMVQYNATWYTAVPTIHQIILDRHSTKPETVYPKLRFIRSCSASLAPAILNRLEEAFGAPVLEAYAMTEATHLMSSNPLPENGPHKAGSVGKPVGLEMVILDENGVVQEATVKGEVCIKGPNVTKGYKSNPVANEEAFRYGWFHTGDIGYFDSDGYLHLVGRIKELINRGGEKISPIEVDAVLLAHPDVAQAVAFGVPDDKYGEEINCAIIRREGSKIGEEDVLSFCRNNLAAFKVPKKVFLTDSLPKTASGKIQRRIVAAHFLQQKS 517
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4516992 4520789 - ClG42_01g0045600.10 Clacu01g0456 239840

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g0456 517 SUPERFAMILY Acetyl-CoA synthetase-like 5 514 - -
Clacu01g0456 517 Pfam AMP-binding enzyme C-terminal domain 427 502 IPR025110 -
Clacu01g0456 517 FunFam Peroxisomal-coenzyme A synthetase 5 411 - -
Clacu01g0456 517 PANTHER ACYL-COA SYNTHETASE 5 515 - GO:0006631(PANTHER)|GO:0031956(PANTHER)
Clacu01g0456 517 FunFam 4-coumarate--CoA ligase 2 414 515 - -
Clacu01g0456 517 Gene3D - 412 514 IPR045851 -
Clacu01g0456 517 Gene3D - 5 411 IPR042099 -
Clacu01g0456 517 Pfam AMP-binding enzyme 12 376 IPR000873 -
Clacu01g0456 517 ProSitePatterns Putative AMP-binding domain signature. 169 180 IPR020845 -
Clacu01g0456 517 CDD FACL_fum10p_like 18 509 IPR045310 GO:0016874(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g0456 K22133 - - csv:101220634 893.649
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0283 Clacu-Chr1:2824237 Clacu01g0456 Clacu-Chr1:4516992 3.50E-223 dispersed
Clacu01g0456 Clacu-Chr1:4516992 Clacu03g0282 Clacu-Chr3:3258102 4.30E-51 dispersed
Clacu01g0456 Clacu-Chr1:4516992 Clacu01g2152 Clacu-Chr1:33043642 6.00E-37 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g689 . Blo15g00167 . . . Bpe07g00938 . . . . . Cma15g01097 . Car15g01008 . . . . . . . . . . Cla01g00434 Cam01g0457 Cec01g0446 Cco01g0468 Clacu01g0456 Cmu01g0435 Cre09g2077 . . . . . . Chy09g01213 . . . Bda06g00683 . . . . Bma12g01121 . . Cmo15g01155 . . . . . Cpe13g00254 Bhi12g00510 . . Lac11g0027 Hepe06g0701 . Lcy12g0025 . . . . . . . . . . Cme09g01750
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002220 2 2 3 3 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 3 3 2 63