Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g0468 ATGCCTTCATGGTGGGGGAAGTCATCATCAAAAGAAGTAAAGAAGAGCAAGGAAAGTTTAATCGACACATTGCAGAGAAAACTTAGAACTACTGATGGTAAAACAAACAGCAAATCAGGAGAGTCTCCAAGAAATTGTAATGACACAATTTCTGAACAGGGATCTCGATCTCCTATTATTTCAAGATCAGTTTCCCCTTCCAGACAAGTTTCAAGATGTCAAAGCTTTTCTGAAAGGCCACAAGCACAACCTCTTCCTCTTCCTGGTTTGCAGCCACCAATTGTAGGTCGTACAGACTCTGGGATTAGTATTTCACCAAAACCAAGATCTGAAAGGGGCTCCAAGCCATCATCATTTCTACCACTTCCAAGACCAGCATGCATTCGTGGGAGGCCAAACCATGCAGATTTAGATGCAGATGTTGGTGTTGGCTCAGTGTCCAGTGAGAGCTCAACTGATAGCACGGATCTATCGGATTCACGCCATCGTAGTCCTCAGGCAACTGACTATGATCTTGGGACTAAAACTGCTGCAGGCAGTCCTTCCAGTGTCATTCTCAAGGATCAGTCTTCTACTGTCACCCAACCAAGTTCGCAAAAGGCCAGCAAACCGGCAAATATCTCATTGAGCAACCACATTTTCTCAACATCACCCAAGCGGAGGCCTTTAAGCAGCCATGTTCCAAATCTGCAAGTTCCATATCATGGGAATTCCTGCATTCCTCCAGAAAGTTCAATGTCAAGTCCTTCTAGAAGTCCCATAAGGGCATTTAGCACAGAGCAAGTTATAAATAATGCTGTCAGTGCTGGGAAGCTCTATATGGATGTCACATTTCCTGGGTCAGGCCATTGTTCCAGTCCTGGTTCTGGTTACAATTCTGGCCATAATTCTATGGGTGGGGATTTGTCAGGGCAGTTATTTTTACAACAAAGTCGGGGTAGCCCTGAATATTCTCCAGCACCCAGTCCCAGAATGACCAGCCCTGGCCCAAGCTCCAGAGTCCATAGTGGTGCAGTGACCCCAATTCATCCTAGGGCGGGAGGTATACCCACTGAGTCGCAGACAAGCTGGCCTGATGAGAAGCAAACTCACCGCTTGCCTCTACCTCCGGTTTCAATTTCCAATGCTCCCTTTTCTCATTCCAATTCAGCAGCAACATCTCCCTCTGTTCCAAGAAGTCCTGGAAGGGCTGATAATCCAGCAAGTCCAGGCTCCCGTTGGAAAAAGGGGAAGCTTTTGGGTAGGGGTACTTTTGGTCATGTGTATGTTGGTTTTAACAGTGAAAGTGGTGGAATGTGTGCAATGAAGGAAGTTACATTATTTTCAGATGATGCAAAGTCCAAGGAGAGTGCCAAGCAATTAATGCAAGAAATTACCTTGTTGAGTCGTTTACAGCATCCAAATATTGTGCAGTACTATGGATCTGAAACGGTTGGCGACAGGCTTTACATTTACCTTGAATATGTATCTGGTGGCTCTATTTACAAGCTTCTCCAGGAATATGGACAGCTTGGAGAATCAGCACTTCGTATTTATACTAAGCAAATATTGTCTGGGCTTGCATATTTACATGCTACAAATACTGTTCACAGGGATATCAAAGGAGCAAATCTACTTGTCGATCCCACTGGTGTAGTTAAGTTGGCTGACTTTGGGATGGCAAAACATATCACCGGGCAATCATGCCCTTTGTCTTTTAAAGGAAGCCCGTACTGGATGGCACCTGAGGTTATTAAAAACTCAAATGGTTGCAACCTTGCGGTAGATATTTGGAGTCTTGGATGCACTGTTTTGGAGATGGCAACAACAAAACCTCCTTGGAGTCAATATGAGGGAGTCGCTGCAATGTTCAAGATTGGCAACAGCAAAGAACTTCCTGAAATCCCGGATCACCTTTCACATGATGGAAAAGACTTTGTTAGACAATGTTTGCAACGGAATCCTGCTCATCGTCCTACAGCTGCTCAGCTTTTGGAACATCCTTTTGTCAAAGATGTAACAACTCATGAAAGACCGATTTTAGGTTCTGAATATTCAGATCCCACTCCAGGACTTACAAATGGAGTAAGAAGTCTGGGTATTGAGCAAGGAAGGAATCCCAGCTTCTTGGATTCTGATAGATCTGCAGCTCATTCATCTAGACTCACAACAGCTGCTTTCCATTCCAGTGATTTCCATATTCCAAGGAACCTATCATGTCCTGTTTCGCCCATCGGAAGCCCTCTGGTACACTCACGGTCGCCACAACATCCCAGTGGAAGAATGTCTCCGTCACCCATCTCCAGCCCTCGTAATATGTCGGGTGCATCCACTCCTCTCACGGGAGGAAGCGGTGCCATTCCACACCAGCATCTCAAGCAATCACTGTACCTACAGGAGGGTTTTGGGAGCTTGCCAAAGCCTTCAATAGCACCCTATAGTAATGGCCCTTCCTATCACGATAGGAACCCTGACATCTTTCAGGGGATTCAGCCAGGCTCTCACATCTTCTCTGAGCTGGTACACCATGAAACTGATTTTCTGGGTAAGCAGTTTGGAAAGCCTGCCTGGGAATTGTATGACAGGCAGGCGGTCTTGGCTGATCGTGTTTCTAGGCAGCTGCTGAGTGATCACATAACAACTCCCTCCCTGGATTTAAGTCCGAGCTCTCTTTTGACCAACCGCAAATAG 2670 45.81 MPSWWGKSSSKEVKKSKESLIDTLQRKLRTTDGKTNSKSGESPRNCNDTISEQGSRSPIISRSVSPSRQVSRCQSFSERPQAQPLPLPGLQPPIVGRTDSGISISPKPRSERGSKPSSFLPLPRPACIRGRPNHADLDADVGVGSVSSESSTDSTDLSDSRHRSPQATDYDLGTKTAAGSPSSVILKDQSSTVTQPSSQKASKPANISLSNHIFSTSPKRRPLSSHVPNLQVPYHGNSCIPPESSMSSPSRSPIRAFSTEQVINNAVSAGKLYMDVTFPGSGHCSSPGSGYNSGHNSMGGDLSGQLFLQQSRGSPEYSPAPSPRMTSPGPSSRVHSGAVTPIHPRAGGIPTESQTSWPDEKQTHRLPLPPVSISNAPFSHSNSAATSPSVPRSPGRADNPASPGSRWKKGKLLGRGTFGHVYVGFNSESGGMCAMKEVTLFSDDAKSKESAKQLMQEITLLSRLQHPNIVQYYGSETVGDRLYIYLEYVSGGSIYKLLQEYGQLGESALRIYTKQILSGLAYLHATNTVHRDIKGANLLVDPTGVVKLADFGMAKHITGQSCPLSFKGSPYWMAPEVIKNSNGCNLAVDIWSLGCTVLEMATTKPPWSQYEGVAAMFKIGNSKELPEIPDHLSHDGKDFVRQCLQRNPAHRPTAAQLLEHPFVKDVTTHERPILGSEYSDPTPGLTNGVRSLGIEQGRNPSFLDSDRSAAHSSRLTTAAFHSSDFHIPRNLSCPVSPIGSPLVHSRSPQHPSGRMSPSPISSPRNMSGASTPLTGGSGAIPHQHLKQSLYLQEGFGSLPKPSIAPYSNGPSYHDRNPDIFQGIQPGSHIFSELVHHETDFLGKQFGKPAWELYDRQAVLADRVSRQLLSDHITTPSLDLSPSSLLTNRK 889
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4654657 4659370 + ClG42_01g0046800.10 Clacu01g0468 239852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g0468 889 ProSiteProfiles Protein kinase domain profile. 407 663 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu01g0468 889 SUPERFAMILY Protein kinase-like (PK-like) 405 754 IPR011009 -
Clacu01g0468 889 MobiDBLite consensus disorder prediction 35 81 - -
Clacu01g0468 889 Gene3D Transferase(Phosphotransferase) domain 1 405 680 - -
Clacu01g0468 889 SMART serkin_6 407 663 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu01g0468 889 MobiDBLite consensus disorder prediction 736 781 - -
Clacu01g0468 889 FunFam Mitogen-activated protein kinase kinase kinase 405 686 - -
Clacu01g0468 889 MobiDBLite consensus disorder prediction 742 777 - -
Clacu01g0468 889 MobiDBLite consensus disorder prediction 282 410 - -
Clacu01g0468 889 Pfam Protein kinase domain 408 663 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu01g0468 889 MobiDBLite consensus disorder prediction 282 317 - -
Clacu01g0468 889 ProSitePatterns Protein kinases ATP-binding region signature. 413 436 IPR017441 GO:0005524(InterPro)
Clacu01g0468 889 CDD STKc_MEKK1_plant 406 663 - -
Clacu01g0468 889 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 40 668 IPR050538 -
Clacu01g0468 889 MobiDBLite consensus disorder prediction 169 208 - -
Clacu01g0468 889 MobiDBLite consensus disorder prediction 1 208 - -
Clacu01g0468 889 MobiDBLite consensus disorder prediction 10 34 - -
Clacu01g0468 889 MobiDBLite consensus disorder prediction 374 393 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0468 Clacu-Chr1:4654657 Clacu01g1732 Clacu-Chr1:29492811 8.80E-97 dispersed
Clacu01g1606 Clacu-Chr1:28072097 Clacu01g0468 Clacu-Chr1:4654657 1.30E-120 transposed
Clacu01g0468 Clacu-Chr1:4654657 Clacu05g0965 Clacu-Chr5:8561300 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73222 PF00069 Pkinase 5.40E-71 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g0468 K20717 - csv:101222716 1618.21