Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g0474 ATGCTCAAACTAATTCTTCTCGTTGCTTCGGCCACCATTTTCCTCCTCCTCCTAATTTCCATCTTCATTTTTCGCCTTAAACTCTCTAAAAATCACCACATCCACAACCCTTCCCCCAATAAGAACAAGAAAACAGAGCACACGCCGCCGGAGCTCACCACTTTTGAGGGCGGCGAAGATTTGACGATCGACGAAATTCTAGAAGCTCCTGGGGAAGTGATCGGAAAATCCCATTATGGAACACTGTATAAGGCTACGTTACAGAGCACCCAAACCACCCGGCTACTCAGATTCCTCCGCCCGGCCGCTGGCGGAGGAGACCATAATGACGACGTCGTTCGGTTTCTGGGTTCGATTCGGCACCGGAATTTGGTCCCGTTGCTGGGATTCTACGCCGGCGGGAGGGGCGAGAAGCTTCTGATTCATCCGTTCTACGAGCAGGGGAATTTGGCGGAGTTCATTAGAGGTGAAACAGAATCAAAAAATTGGGAGGTCATTTACAAAATCTCCATCGGAATCGCAAAAGCCCTGCATCATCTTCACAACGGATTGCAAAAACCAATCCCTCACGGAAATCTCAACTCCAACAACATTCTTCTCGATCAAAATCTCCATCCGCACGTCTCCGATTTCGGCCTCCATCTCCTCCTCAACGCCGCCGCAACTCGAGAAATGCTCCACGTTTCAGCCGCCGCTGGCTACAAAGCGCCGGAACTTATCAAAATGACCGACGCTGATGAACGCACCGACGTCTACAGCTACGGCAAGATCTTACTCGAGTTGCTCTCTGCCAAAGAGCCCACGATTCGAAATCCGGTTGCTACCGACGATTCCGGCGTTTCTGAAAATCGGATTCTCCGATGCATTCTTCAGATCGGCGAGGTTTGTTGTCGTTCTTCGCCGAATCTTCGGCCGGATTTCAAACAAGTGATTGCTAAGATCGAAGAAATCGGAAGGATTGAGATGGATTAA 972 50.0 MLKLILLVASATIFLLLLISIFIFRLKLSKNHHIHNPSPNKNKKTEHTPPELTTFEGGEDLTIDEILEAPGEVIGKSHYGTLYKATLQSTQTTRLLRFLRPAAGGGDHNDDVVRFLGSIRHRNLVPLLGFYAGGRGEKLLIHPFYEQGNLAEFIRGETESKNWEVIYKISIGIAKALHHLHNGLQKPIPHGNLNSNNILLDQNLHPHVSDFGLHLLLNAAATREMLHVSAAAGYKAPELIKMTDADERTDVYSYGKILLELLSAKEPTIRNPVATDDSGVSENRILRCILQIGEVCCRSSPNLRPDFKQVIAKIEEIGRIEMD 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4717443 4720988 - ClG42_01g0047400.10 Clacu01g0474 239858
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g0474 323 SUPERFAMILY Protein kinase-like (PK-like) 71 315 IPR011009 -
Clacu01g0474 323 Gene3D Transferase(Phosphotransferase) domain 1 62 323 - -
Clacu01g0474 323 ProSiteProfiles Protein kinase domain profile. 68 317 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu01g0474 323 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 4 318 IPR052451 -
Clacu01g0474 323 Pfam Protein tyrosine and serine/threonine kinase 72 313 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0474 Clacu-Chr1:4717443 Clacu09g0913 Clacu-Chr9:8505839 8.30E-45 dispersed
Clacu01g0474 Clacu-Chr1:4717443 Clacu07g1691 Clacu-Chr7:31652740 4.10E-84 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73224 PF07714 PK_Tyr_Ser-Thr 1.50E-26 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g0474 - - - 0.0