Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g0486 ATGGCTCAAAAGCTTCATTTTTCCATCATTCTAATTTCTTTGTTCATCCTCTCGTCAATTTCCCAATCTTTCTCAACCAAACCCAATAACAATGCCATAGATTTATGGTGCAGCCGAACGCCATATCCCGATGTTTGCAAACACTTCTTCAATGGCCAATTCGACCTTAAAAAGCTTTCAGAATTAAAAAAAACAGCTCTCAAAATCGCGATGGAGAGAGCTATAATAGCCGAAACACTCACAAAAGAGTTAGGCCAGAAATGCCGTAACCAAAAAGAGAGAGCCGCTTGGGCTGACTGTTTGGAGCTTTACCAAACCACAATCCTCCACCTCAACAAAACCTTCTCCGAACAAAATTGCTCCGACTTCGACATCCAAACATGGCTCAGCTCCGCCTTGACCAACCTCGACACATGTCGTGCCGGGTTCGTCGACCTCGGCGTCAAGGATTACGGCGTTGTTTTCCCTTTTTTGGCAAATAACAACGTCACGAAGCTTATAAGTAATAGTTTGGCGATGAATAACTGCTCCGAGAGTGATGTGGGGTATAAGAATAATGAAGGGTTTCCGAAGTGGCTTCGGGTTGGAGACCGTCGGTTGTTGCAGGCGGCAGAGCCTAAGGCAGATTTGGTGGTGGCGCAAGACGGGTCGGGGAATTATAAGACGGTGCAAGCGGCGGTGGACGCGGCGGCGAAGAGGAAAGGGAGTGGGAGATTTGTGATACATATAAAGAGAGGAGTTTATAAGGAGAATGTAGTGATAAAGGTGAAGAATTTGATGCTTGTTGGAGATGGATTGAGGTATACAATTATTAGTGGGAGTAGAAGTGTTGGTGGTGGTTCTACTACTTTCAACTCTGCTACTGTTGCTGTGACTGGTGAACGTTTCATTGCCCGTGGCATCACATTCCGCAATACTGCGGGACCCGAAAACCACCAAGCAGTAGCCCTTCGGTCAGGTTCCGATCTCTCAGTGTTCTTCCGGTGCGGTTTTGAGGGATACCAAGACACTCTCTACGTGCATTCACAAAGACAATTCTACAGAGAATGCTACATTTATGGTACGGTCGATTTCATCTTCGGTAATGCCGCCGTAGTTCTCCAGAACTGCATGATCTACGCAAGAAAACCTATCCCAGGGCAACAATGCGTGGTCACGGCTCAAGGCCGAACCGACCCAAACCAAAACACGGGAATCTCAATCCACAACTCGAGAGTGATGGCAGCAGATGATCTCAAACCGGTTCTTAGCTCAGTGAGAACCTACTTGGGGAGGCCATGGAAGGAATACTCTCGCACAGTTTACTTGCAAAACTTCATGGATAGCTTGGTGAATCCAGCAGGATGGTTGGAATGGAGTGCGAGTGAAGAGGATCGCAGTGACGACTCAGTAAAATTCAAGCTCAACAGACCGGATTGCAGGACGGGAGGCTTCAGATGCAAAAGTTCATTGAACGGAGAATGA 1464 47.13 MAQKLHFSIILISLFILSSISQSFSTKPNNNAIDLWCSRTPYPDVCKHFFNGQFDLKKLSELKKTALKIAMERAIIAETLTKELGQKCRNQKERAAWADCLELYQTTILHLNKTFSEQNCSDFDIQTWLSSALTNLDTCRAGFVDLGVKDYGVVFPFLANNNVTKLISNSLAMNNCSESDVGYKNNEGFPKWLRVGDRRLLQAAEPKADLVVAQDGSGNYKTVQAAVDAAAKRKGSGRFVIHIKRGVYKENVVIKVKNLMLVGDGLRYTIISGSRSVGGGSTTFNSATVAVTGERFIARGITFRNTAGPENHQAVALRSGSDLSVFFRCGFEGYQDTLYVHSQRQFYRECYIYGTVDFIFGNAAVVLQNCMIYARKPIPGQQCVVTAQGRTDPNQNTGISIHNSRVMAADDLKPVLSSVRTYLGRPWKEYSRTVYLQNFMDSLVNPAGWLEWSASEEDRSDDSVKFKLNRPDCRTGGFRCKSSLNGE 487
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4787243 4791765 - ClG42_01g0048600.10 Clacu01g0486 239870
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g0486 487 PANTHER PECTINESTERASE 9 454 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Clacu01g0486 487 Pfam Pectinesterase 209 455 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Clacu01g0486 487 NCBIfam pectinesterase inhibitor domain 6 175 IPR006501 GO:0004857(InterPro)
Clacu01g0486 487 ProSitePatterns Pectinesterase signature 2. 352 361 IPR033131 -
Clacu01g0486 487 SUPERFAMILY Pectin lyase-like 206 455 IPR011050 -
Clacu01g0486 487 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 30 176 IPR035513 -
Clacu01g0486 487 Pfam Plant invertase/pectin methylesterase inhibitor 32 173 IPR006501 GO:0004857(InterPro)
Clacu01g0486 487 CDD PMEI-like_3 35 175 - -
Clacu01g0486 487 Gene3D Invertase/pectin methylesterase inhibitor family protein 28 176 IPR035513 -
Clacu01g0486 487 ProSitePatterns Pectinesterase signature 1. 235 254 IPR018040 -
Clacu01g0486 487 FunFam Pectinesterase 4 206 477 - -
Clacu01g0486 487 Gene3D - 203 477 IPR012334 -
Clacu01g0486 487 SMART PMEI_2 28 173 IPR006501 GO:0004857(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0486 Clacu-Chr1:4787243 Clacu05g0865 Clacu-Chr5:7575506 1.90E-165 dispersed
Clacu01g0486 Clacu-Chr1:4787243 Clacu01g0639 Clacu-Chr1:6814566 4.80E-113 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g0486 K01051 - csv:101216005 800.816