Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g0504 ATGGTCTTCTGCAAAATGGCCCCTACTTCCCTCGCTTCCCGCTTCCGAAAATCCGTCACCTCGACCGCACTCCGATCGTACGTCGCCGAGTTCATCTCCACCTTCTTCTACGTCTTCTCTGTCGTCGGAGCATCCATGTCCTCCCGGAAGTTTTTGCCGGGTGTTGTTGCTACGACAGACCCGTCGAGTCTTCTGATGGCCGCCATCGCCAATGCCTTCGCTTTGGCCTCGGCTGTTTACATTGCCGCCAACATCTCCGGCGGACATCTCAACCCGGCTGTGACGTTCGGAATGGCCGTCGCCGGCCATGTTAGTGTTCCCACTGCTCTCTTTTACTGGTTTGCTCAAATGCTTGCCTCTGTCATGGCCTGTATTGTTCTTAGAGCCACCCTTGTTGGACAGCGCGTTACAAGCTATGCCATCACTGAAGAGATGACGGGCTTCGGAGCGTCGGTAGTGGAAGGTGTATTGACATTTGCCCTAGTATACACCGTTTTCGCTGCCAGCGACTCAAGAAGAGGTCCGTGCAATGCGATCGGCGCTGTGATGATTGGGCTGATGGCTGGAGCCAATGTGCTGGCTGCCGGGCCATTTTCCGGTGGATCGGTGAACCCGGCATGCGCGTTTGGGTCAGCAATTGTGGCTGGGAGTTTCAAGAACCAGGCAGTGTACTGGGTTGGGCCATTGATTGGGGCGGCTTTGGCTGGAATTGTTCATGATAATGTGGTTTTTCCGGCTGAAAATGTAGATTCATTCAGAGGGGTTCCTGAGGCTGTTGTGGTGTAA 786 54.58 MVFCKMAPTSLASRFRKSVTSTALRSYVAEFISTFFYVFSVVGASMSSRKFLPGVVATTDPSSLLMAAIANAFALASAVYIAANISGGHLNPAVTFGMAVAGHVSVPTALFYWFAQMLASVMACIVLRATLVGQRVTSYAITEEMTGFGASVVEGVLTFALVYTVFAASDSRRGPCNAIGAVMIGLMAGANVLAAGPFSGGSVNPACAFGSAIVAGSFKNQAVYWVGPLIGAALAGIVHDNVVFPAENVDSFRGVPEAVVV 261
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 4990527 4991737 + ClG42_01g0050400.10 Clacu01g0504 239888
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g0504 261 Pfam Major intrinsic protein 20 239 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu01g0504 261 PRINTS Major intrinsic protein family signature 185 207 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu01g0504 261 PRINTS Major intrinsic protein family signature 222 242 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu01g0504 261 PRINTS Major intrinsic protein family signature 71 95 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu01g0504 261 PRINTS Major intrinsic protein family signature 25 44 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu01g0504 261 PRINTS Major intrinsic protein family signature 108 127 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu01g0504 261 PRINTS Major intrinsic protein family signature 153 171 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Clacu01g0504 261 ProSitePatterns MIP family signature. 89 97 IPR022357 -
Clacu01g0504 261 FunFam Probable aquaporin TIP5-1 9 251 - -
Clacu01g0504 261 PANTHER AQUAPORIN-8 16 245 IPR034294 GO:0006833(PANTHER)|GO:0015250(PANTHER)|GO:0016020(PANTHER)
Clacu01g0504 261 Gene3D Glycerol uptake facilitator protein. 10 252 IPR023271 -
Clacu01g0504 261 SUPERFAMILY Aquaporin-like 20 247 IPR023271 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0504 Clacu-Chr1:4990527 Clacu09g0184 Clacu-Chr9:1767788 1.00E-48 dispersed
Clacu01g0504 Clacu-Chr1:4990527 Clacu04g0996 Clacu-Chr4:24122564 1.50E-44 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g0504 K09873 - csv:101214078 442.195