Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Clacu01g0522 | ATGACTAATGTTCGAAATGATCCAATTTTAAAAATGGAAACAACATGTGGAACACTTCTACACGAACTTCAGATCATTTGGGATGAAGTAGGGGAATCTGAGGCCACAAGGGACAAAATGTTGCTTGAGGTTGAACAAGAGTGCTTAGAAGTTTACAGAAGAAAGGTAGATCAAGCAAACCGCTTTAGAGCTCAGCTAAGGCAGGCAATTGCCGATTCTGAAGCAGAATTGGCTGCCATCTGCTCTGCAATGGGAGAGAGACCAGTACATACGAGGCAGGCTGATCAAAAGACTGGAACCTTGAGAGAAGAGATGGCCCGTGTTCTTCCACAAGTGGATGAAATGCGGAAAAGAAAAGTAGACAGAAGAAATCAAATTTTAGAAGTCCTAGAACAAATACAGAAGATATCCTATGAGATTTATGGATCAAAATTTTCACATTCCAGTGTAGCTATTGATGAAAATGATTTATCATTGAGGAAGCTAGAAGAATTGCAAGGACAGTTACATACGCTACAGAAGGAGAAGAGTGACAGGCAGATGGTTGTTCAGGAGCACCTTCAGACTCTAAACTTGCTTTGTTCAGTGCTTGGGATGGATTTCAAGCAAACAGTGAATGGATTTCATCCTAATTTGGGTGACCCAGATGGAACTTTTAACATAACTAGTGAATCAATTGAAACCCTGGCTGCTGCAATAATTAATTTGCGCGAGGTCAAATTACGAAGAATGCAGCGGCTCCAAGATCTTGCTACAACTTTGTTGGAGCTTTGGAATCTAATGGATACACCAATGGAAGAACAACAGTTGTTCCAAAACGTGACATGTAATATAGCTGCTTCAGAAGATGAAGTAAACGAACCCAATAGTCTCTCTGTGGACTCAATTAATTCTGTTGAAGCAGAAGTGTCTCGGTTAGAAGAGTTAAAATCAAGCAAGATGAAAGAACTTGTTTTGAAGAAGAGGTCAGAGCTGGATGAGATTTGTAGAAAAACGCATTTAGTCCTGGAAGAAGATACAATAGTGGAATATGCAATTGAAACTATCGACTCTGGAGATGTTGACTCTGCCATTATTCTTGAGCAAATTGAGCTTCAGATTGCCAGGATTAAAGAGGAAGCATTTGTCAGGAAAGAAATTCTTGAAAAAGTTGAGAAATGGTTGACTGCCTGTGATGAGGAGTGTTGGCTGGAGGAGTATAATAGGGATGAAAATAGATATAATGCTGGTAGAGGGGCACATCTCATTCTCAAACGCGCAGAGAAGGCCCGAGCTTTGGTTAATAAGCTTCCAGGAATGGTGGATGCATTAACTTCAAAAACAATGGCATGGGAGAAGGAAAGAGGGATTGAGTTTACATACGATGGAGTCAGTCTGCTCAGTATGCTTGAAGAGTATTCTGTATTAAGGCAAGAGAAAGAGCAGGAGCGTCGCAGGCTGCGGGACCAGAAGAAACTCCAGGGACAGCTAATAGCAGAACAGGAGGCTCTTTATGGATCGAAGCCAAGCCCCTCAAAACCCCAGAGTGTTAAAAAAGCTTCCAGAGCTTCAGCTGCAGGTGCAAATAGTAAAAGGCTTTCTCTTGGAGGGACGTTGCACCAAACGCCCAAGCCTGATCCAATTCACAAGGCAACACCTCAGTCACGTCCGTCTAGGAAAGGTGACCACCTGAATGATCAAAACTATGATGAAGGATTTGGAGCTCTTCCAATTGCTGGCCGAAGAGAACTTGATTTTTCTGGTCAACCTCCGAGCCACAATAACTCGCTTGCCAATGCTCGTGAACAACCTGAGTTGGGGATTCGGAAACCTTTTGCACCAATTGCTACCACAGTCCAACCAAAGACGAACACAACGAACTCAATCAATGATGCAAACACAGCATCTAGTGAACCGTTGCAAAAAACAAGCCCAACTAGCAATGTGCCATTTACACCTTTGAAAAAGATCTCAGTTGCTACTGATGAAGACCAAAACATGACTCCAAAGGCAATGTCAATTCCAGTACCATCTACCCCTTCAACTCTATCAGTTGCAATGCAGACCACTACAACTCCGGCAGTTGCCCTGCCTCCTCCCGCTTTCAAAGCTGAGGAAATTCCTGAAGACAACGTTGAATATTCGTTCGAGGAAAGAAGAGCCGGGTTCTGGATTTCGTCTCATTTTAATTGGCTCTGTTTTTGTGTTCTTGTTTCATTGTCTTCTTCATTGAGAGCTTCTTCTTGTTGTTGTGGTTTGTTAAGTATCGTCTGTAGAGTGAATAATGGAGGTTTAGGGTTTAAGGTGTCGGTTTACCGTTTATGTACTTTTGCTTTAGAACACATCTTTTTCTTTTCTGTCACTGTAAAAATGGAAGAGAAAGAGGGAGGAGTGGATTTCGGGTTTGCAGTAAAAGTGAGCCAAGCTCCAGAGAGCTTCGGGATGATGGATTCGAGACCTGAAAATTCAAGCACAGATGGTGACACGCCGCCGCCGCAGCCGCCGGCGAGTGTTCCGACGGCGGGGGCTACAGATGGAAAGAAGAGAAGAGGGAGACCGAGAAAGTACGGTCCCGATGGGACTGTAGCTCCAACATTGTCACCAATGCCGATTTCGTCATCGATTCCACTGACCGGAGAATTTCCGGGTTGGAAACGGGGAAGAGGGCGGTCAGTAGAGTCGATTAAGAAGTCGCGGAAGTTCGAGTATGAGATTCCAGGTAACAAGGTTGCCTTCTTTGCTGGAGCAGATTTCACACCTCACGTGATCACTGTTAATATTGGTGAGGATGTTAACTTGAAAGTTATGTCATTTTCTCAACAAGGATCTCGGGCGATTTGTATACTCTCTGCTAATGGTATGGTTTCAAATGTTACACTTCGGCAGTCAACATCTTCTGGGGGTACTTTGACATATGAGGGTCGATTTGAGATACTTTCATTGTCTGGATCATATATGCCTTCTGAGATTGGTGGAACAAAGAGCCGATCTGGAGGGATGAGTGTCTCTTTGGCTGGCCCAGATGGCCGGGTGATGGGTGGTGGACTTGCCGGCATGCTGATAGCAGCTGGTCCAGTGCAGGTGGTGGTGGGTAGTTTCCTGCCACCAGGTCACCAGCAGGAAAACAAACCAAAGAAGAATAGGATGGAGCCTACATCGAACACAAATTTGCCTCCAGCCAATGTTCTTTCTGGCGAAGGGACAAAGGAAGTACTTGGAGGAGTGAAGCCCGTAGTTGCATCGACTCTAATTGGAGATAAAGCAGCTTCTTTAGACCAAACTTCAGCTTTTAAGACTTCACAAGTCAACGACAAATCACCTTTTCTACAAGAATCAAGAGATTTGCTGGTGCTTTGGCTTTTCCTCAACCTCGATCATCAGCAGTATGAGCTCATTGATTCTTTAAAGGGCTAA | 3393 | 44.09 | MTNVRNDPILKMETTCGTLLHELQIIWDEVGESEATRDKMLLEVEQECLEVYRRKVDQANRFRAQLRQAIADSEAELAAICSAMGERPVHTRQADQKTGTLREEMARVLPQVDEMRKRKVDRRNQILEVLEQIQKISYEIYGSKFSHSSVAIDENDLSLRKLEELQGQLHTLQKEKSDRQMVVQEHLQTLNLLCSVLGMDFKQTVNGFHPNLGDPDGTFNITSESIETLAAAIINLREVKLRRMQRLQDLATTLLELWNLMDTPMEEQQLFQNVTCNIAASEDEVNEPNSLSVDSINSVEAEVSRLEELKSSKMKELVLKKRSELDEICRKTHLVLEEDTIVEYAIETIDSGDVDSAIILEQIELQIARIKEEAFVRKEILEKVEKWLTACDEECWLEEYNRDENRYNAGRGAHLILKRAEKARALVNKLPGMVDALTSKTMAWEKERGIEFTYDGVSLLSMLEEYSVLRQEKEQERRRLRDQKKLQGQLIAEQEALYGSKPSPSKPQSVKKASRASAAGANSKRLSLGGTLHQTPKPDPIHKATPQSRPSRKGDHLNDQNYDEGFGALPIAGRRELDFSGQPPSHNNSLANAREQPELGIRKPFAPIATTVQPKTNTTNSINDANTASSEPLQKTSPTSNVPFTPLKKISVATDEDQNMTPKAMSIPVPSTPSTLSVAMQTTTTPAVALPPPAFKAEEIPEDNVEYSFEERRAGFWISSHFNWLCFCVLVSLSSSLRASSCCCGLLSIVCRVNNGGLGFKVSVYRLCTFALEHIFFFSVTVKMEEKEGGVDFGFAVKVSQAPESFGMMDSRPENSSTDGDTPPPQPPASVPTAGATDGKKRRGRPRKYGPDGTVAPTLSPMPISSSIPLTGEFPGWKRGRGRSVESIKKSRKFEYEIPGNKVAFFAGADFTPHVITVNIGEDVNLKVMSFSQQGSRAICILSANGMVSNVTLRQSTSSGGTLTYEGRFEILSLSGSYMPSEIGGTKSRSGGMSVSLAGPDGRVMGGGLAGMLIAAGPVQVVVGSFLPPGHQQENKPKKNRMEPTSNTNLPPANVLSGEGTKEVLGGVKPVVASTLIGDKAASLDQTSAFKTSQVNDKSPFLQESRDLLVLWLFLNLDHQQYELIDSLKG | 1130 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 5151781 | 5164738 | + | ClG42_01g0052200.10 | Clacu01g0522 | 239906 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Clacu01g0522 | 1130 | Pfam | Microtubule associated protein (MAP65/ASE1 family) | 18 | 508 | - | - | |
Clacu01g0522 | 1130 | MobiDBLite | consensus disorder prediction | 546 | 560 | - | - | |
Clacu01g0522 | 1130 | Coils | Coil | 459 | 486 | - | - | |
Clacu01g0522 | 1130 | CDD | DUF296 | 912 | 1026 | IPR005175 | - | |
Clacu01g0522 | 1130 | Coils | Coil | 296 | 316 | - | - | |
Clacu01g0522 | 1130 | Coils | Coil | 49 | 76 | - | - | |
Clacu01g0522 | 1130 | Coils | Coil | 155 | 175 | - | - | |
Clacu01g0522 | 1130 | ProSiteProfiles | PPC domain profile profile. | 908 | 1047 | IPR005175 | - | |
Clacu01g0522 | 1130 | MobiDBLite | consensus disorder prediction | 613 | 645 | - | - | |
Clacu01g0522 | 1130 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 913 | 1026 | IPR005175 | - | |
Clacu01g0522 | 1130 | MobiDBLite | consensus disorder prediction | 1027 | 1050 | - | - | |
Clacu01g0522 | 1130 | MobiDBLite | consensus disorder prediction | 501 | 516 | - | - | |
Clacu01g0522 | 1130 | Gene3D | - | 366 | 500 | - | - | |
Clacu01g0522 | 1130 | FunFam | 65-kDa microtubule-associated protein 6 | 367 | 500 | - | - | |
Clacu01g0522 | 1130 | MobiDBLite | consensus disorder prediction | 806 | 882 | - | - | |
Clacu01g0522 | 1130 | PANTHER | PROTEIN REGULATOR OF CYTOKINESIS 1 PRC1-RELATED | 6 | 608 | IPR007145 | GO:0000226(PANTHER)|GO:0000226(InterPro)|GO:0005737(PANTHER)|GO:0005819(PANTHER)|GO:0008017(PANTHER)|GO:0008017(InterPro) | |
Clacu01g0522 | 1130 | FunFam | AT-hook motif nuclear-localized protein 1-like | 913 | 1044 | - | - | |
Clacu01g0522 | 1130 | MobiDBLite | consensus disorder prediction | 493 | 566 | - | - | |
Clacu01g0522 | 1130 | Gene3D | - | 913 | 1043 | - | - | |
Clacu01g0522 | 1130 | SUPERFAMILY | AF0104/ALDC/Ptd012-like | 910 | 1042 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Clacu01g0522 | Clacu-Chr1:5151781 | Clacu05g0883 | Clacu-Chr5:7718269 | 2.00E-239 | dispersed | |
Clacu01g0522 | Clacu-Chr1:5151781 | Clacu05g0882 | Clacu-Chr5:7714172 | 2.50E-88 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Clacu01g0522 | K16732 | - | csv:101215212 | 1238.79 |