Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g0522 ATGACTAATGTTCGAAATGATCCAATTTTAAAAATGGAAACAACATGTGGAACACTTCTACACGAACTTCAGATCATTTGGGATGAAGTAGGGGAATCTGAGGCCACAAGGGACAAAATGTTGCTTGAGGTTGAACAAGAGTGCTTAGAAGTTTACAGAAGAAAGGTAGATCAAGCAAACCGCTTTAGAGCTCAGCTAAGGCAGGCAATTGCCGATTCTGAAGCAGAATTGGCTGCCATCTGCTCTGCAATGGGAGAGAGACCAGTACATACGAGGCAGGCTGATCAAAAGACTGGAACCTTGAGAGAAGAGATGGCCCGTGTTCTTCCACAAGTGGATGAAATGCGGAAAAGAAAAGTAGACAGAAGAAATCAAATTTTAGAAGTCCTAGAACAAATACAGAAGATATCCTATGAGATTTATGGATCAAAATTTTCACATTCCAGTGTAGCTATTGATGAAAATGATTTATCATTGAGGAAGCTAGAAGAATTGCAAGGACAGTTACATACGCTACAGAAGGAGAAGAGTGACAGGCAGATGGTTGTTCAGGAGCACCTTCAGACTCTAAACTTGCTTTGTTCAGTGCTTGGGATGGATTTCAAGCAAACAGTGAATGGATTTCATCCTAATTTGGGTGACCCAGATGGAACTTTTAACATAACTAGTGAATCAATTGAAACCCTGGCTGCTGCAATAATTAATTTGCGCGAGGTCAAATTACGAAGAATGCAGCGGCTCCAAGATCTTGCTACAACTTTGTTGGAGCTTTGGAATCTAATGGATACACCAATGGAAGAACAACAGTTGTTCCAAAACGTGACATGTAATATAGCTGCTTCAGAAGATGAAGTAAACGAACCCAATAGTCTCTCTGTGGACTCAATTAATTCTGTTGAAGCAGAAGTGTCTCGGTTAGAAGAGTTAAAATCAAGCAAGATGAAAGAACTTGTTTTGAAGAAGAGGTCAGAGCTGGATGAGATTTGTAGAAAAACGCATTTAGTCCTGGAAGAAGATACAATAGTGGAATATGCAATTGAAACTATCGACTCTGGAGATGTTGACTCTGCCATTATTCTTGAGCAAATTGAGCTTCAGATTGCCAGGATTAAAGAGGAAGCATTTGTCAGGAAAGAAATTCTTGAAAAAGTTGAGAAATGGTTGACTGCCTGTGATGAGGAGTGTTGGCTGGAGGAGTATAATAGGGATGAAAATAGATATAATGCTGGTAGAGGGGCACATCTCATTCTCAAACGCGCAGAGAAGGCCCGAGCTTTGGTTAATAAGCTTCCAGGAATGGTGGATGCATTAACTTCAAAAACAATGGCATGGGAGAAGGAAAGAGGGATTGAGTTTACATACGATGGAGTCAGTCTGCTCAGTATGCTTGAAGAGTATTCTGTATTAAGGCAAGAGAAAGAGCAGGAGCGTCGCAGGCTGCGGGACCAGAAGAAACTCCAGGGACAGCTAATAGCAGAACAGGAGGCTCTTTATGGATCGAAGCCAAGCCCCTCAAAACCCCAGAGTGTTAAAAAAGCTTCCAGAGCTTCAGCTGCAGGTGCAAATAGTAAAAGGCTTTCTCTTGGAGGGACGTTGCACCAAACGCCCAAGCCTGATCCAATTCACAAGGCAACACCTCAGTCACGTCCGTCTAGGAAAGGTGACCACCTGAATGATCAAAACTATGATGAAGGATTTGGAGCTCTTCCAATTGCTGGCCGAAGAGAACTTGATTTTTCTGGTCAACCTCCGAGCCACAATAACTCGCTTGCCAATGCTCGTGAACAACCTGAGTTGGGGATTCGGAAACCTTTTGCACCAATTGCTACCACAGTCCAACCAAAGACGAACACAACGAACTCAATCAATGATGCAAACACAGCATCTAGTGAACCGTTGCAAAAAACAAGCCCAACTAGCAATGTGCCATTTACACCTTTGAAAAAGATCTCAGTTGCTACTGATGAAGACCAAAACATGACTCCAAAGGCAATGTCAATTCCAGTACCATCTACCCCTTCAACTCTATCAGTTGCAATGCAGACCACTACAACTCCGGCAGTTGCCCTGCCTCCTCCCGCTTTCAAAGCTGAGGAAATTCCTGAAGACAACGTTGAATATTCGTTCGAGGAAAGAAGAGCCGGGTTCTGGATTTCGTCTCATTTTAATTGGCTCTGTTTTTGTGTTCTTGTTTCATTGTCTTCTTCATTGAGAGCTTCTTCTTGTTGTTGTGGTTTGTTAAGTATCGTCTGTAGAGTGAATAATGGAGGTTTAGGGTTTAAGGTGTCGGTTTACCGTTTATGTACTTTTGCTTTAGAACACATCTTTTTCTTTTCTGTCACTGTAAAAATGGAAGAGAAAGAGGGAGGAGTGGATTTCGGGTTTGCAGTAAAAGTGAGCCAAGCTCCAGAGAGCTTCGGGATGATGGATTCGAGACCTGAAAATTCAAGCACAGATGGTGACACGCCGCCGCCGCAGCCGCCGGCGAGTGTTCCGACGGCGGGGGCTACAGATGGAAAGAAGAGAAGAGGGAGACCGAGAAAGTACGGTCCCGATGGGACTGTAGCTCCAACATTGTCACCAATGCCGATTTCGTCATCGATTCCACTGACCGGAGAATTTCCGGGTTGGAAACGGGGAAGAGGGCGGTCAGTAGAGTCGATTAAGAAGTCGCGGAAGTTCGAGTATGAGATTCCAGGTAACAAGGTTGCCTTCTTTGCTGGAGCAGATTTCACACCTCACGTGATCACTGTTAATATTGGTGAGGATGTTAACTTGAAAGTTATGTCATTTTCTCAACAAGGATCTCGGGCGATTTGTATACTCTCTGCTAATGGTATGGTTTCAAATGTTACACTTCGGCAGTCAACATCTTCTGGGGGTACTTTGACATATGAGGGTCGATTTGAGATACTTTCATTGTCTGGATCATATATGCCTTCTGAGATTGGTGGAACAAAGAGCCGATCTGGAGGGATGAGTGTCTCTTTGGCTGGCCCAGATGGCCGGGTGATGGGTGGTGGACTTGCCGGCATGCTGATAGCAGCTGGTCCAGTGCAGGTGGTGGTGGGTAGTTTCCTGCCACCAGGTCACCAGCAGGAAAACAAACCAAAGAAGAATAGGATGGAGCCTACATCGAACACAAATTTGCCTCCAGCCAATGTTCTTTCTGGCGAAGGGACAAAGGAAGTACTTGGAGGAGTGAAGCCCGTAGTTGCATCGACTCTAATTGGAGATAAAGCAGCTTCTTTAGACCAAACTTCAGCTTTTAAGACTTCACAAGTCAACGACAAATCACCTTTTCTACAAGAATCAAGAGATTTGCTGGTGCTTTGGCTTTTCCTCAACCTCGATCATCAGCAGTATGAGCTCATTGATTCTTTAAAGGGCTAA 3393 44.09 MTNVRNDPILKMETTCGTLLHELQIIWDEVGESEATRDKMLLEVEQECLEVYRRKVDQANRFRAQLRQAIADSEAELAAICSAMGERPVHTRQADQKTGTLREEMARVLPQVDEMRKRKVDRRNQILEVLEQIQKISYEIYGSKFSHSSVAIDENDLSLRKLEELQGQLHTLQKEKSDRQMVVQEHLQTLNLLCSVLGMDFKQTVNGFHPNLGDPDGTFNITSESIETLAAAIINLREVKLRRMQRLQDLATTLLELWNLMDTPMEEQQLFQNVTCNIAASEDEVNEPNSLSVDSINSVEAEVSRLEELKSSKMKELVLKKRSELDEICRKTHLVLEEDTIVEYAIETIDSGDVDSAIILEQIELQIARIKEEAFVRKEILEKVEKWLTACDEECWLEEYNRDENRYNAGRGAHLILKRAEKARALVNKLPGMVDALTSKTMAWEKERGIEFTYDGVSLLSMLEEYSVLRQEKEQERRRLRDQKKLQGQLIAEQEALYGSKPSPSKPQSVKKASRASAAGANSKRLSLGGTLHQTPKPDPIHKATPQSRPSRKGDHLNDQNYDEGFGALPIAGRRELDFSGQPPSHNNSLANAREQPELGIRKPFAPIATTVQPKTNTTNSINDANTASSEPLQKTSPTSNVPFTPLKKISVATDEDQNMTPKAMSIPVPSTPSTLSVAMQTTTTPAVALPPPAFKAEEIPEDNVEYSFEERRAGFWISSHFNWLCFCVLVSLSSSLRASSCCCGLLSIVCRVNNGGLGFKVSVYRLCTFALEHIFFFSVTVKMEEKEGGVDFGFAVKVSQAPESFGMMDSRPENSSTDGDTPPPQPPASVPTAGATDGKKRRGRPRKYGPDGTVAPTLSPMPISSSIPLTGEFPGWKRGRGRSVESIKKSRKFEYEIPGNKVAFFAGADFTPHVITVNIGEDVNLKVMSFSQQGSRAICILSANGMVSNVTLRQSTSSGGTLTYEGRFEILSLSGSYMPSEIGGTKSRSGGMSVSLAGPDGRVMGGGLAGMLIAAGPVQVVVGSFLPPGHQQENKPKKNRMEPTSNTNLPPANVLSGEGTKEVLGGVKPVVASTLIGDKAASLDQTSAFKTSQVNDKSPFLQESRDLLVLWLFLNLDHQQYELIDSLKG 1130
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5151781 5164738 + ClG42_01g0052200.10 Clacu01g0522 239906
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g0522 1130 Pfam Microtubule associated protein (MAP65/ASE1 family) 18 508 - -
Clacu01g0522 1130 MobiDBLite consensus disorder prediction 546 560 - -
Clacu01g0522 1130 Coils Coil 459 486 - -
Clacu01g0522 1130 CDD DUF296 912 1026 IPR005175 -
Clacu01g0522 1130 Coils Coil 296 316 - -
Clacu01g0522 1130 Coils Coil 49 76 - -
Clacu01g0522 1130 Coils Coil 155 175 - -
Clacu01g0522 1130 ProSiteProfiles PPC domain profile profile. 908 1047 IPR005175 -
Clacu01g0522 1130 MobiDBLite consensus disorder prediction 613 645 - -
Clacu01g0522 1130 Pfam Plants and Prokaryotes Conserved (PCC) domain 913 1026 IPR005175 -
Clacu01g0522 1130 MobiDBLite consensus disorder prediction 1027 1050 - -
Clacu01g0522 1130 MobiDBLite consensus disorder prediction 501 516 - -
Clacu01g0522 1130 Gene3D - 366 500 - -
Clacu01g0522 1130 FunFam 65-kDa microtubule-associated protein 6 367 500 - -
Clacu01g0522 1130 MobiDBLite consensus disorder prediction 806 882 - -
Clacu01g0522 1130 PANTHER PROTEIN REGULATOR OF CYTOKINESIS 1 PRC1-RELATED 6 608 IPR007145 GO:0000226(PANTHER)|GO:0000226(InterPro)|GO:0005737(PANTHER)|GO:0005819(PANTHER)|GO:0008017(PANTHER)|GO:0008017(InterPro)
Clacu01g0522 1130 FunFam AT-hook motif nuclear-localized protein 1-like 913 1044 - -
Clacu01g0522 1130 MobiDBLite consensus disorder prediction 493 566 - -
Clacu01g0522 1130 Gene3D - 913 1043 - -
Clacu01g0522 1130 SUPERFAMILY AF0104/ALDC/Ptd012-like 910 1042 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0522 Clacu-Chr1:5151781 Clacu05g0883 Clacu-Chr5:7718269 2.00E-239 dispersed
Clacu01g0522 Clacu-Chr1:5151781 Clacu05g0882 Clacu-Chr5:7714172 2.50E-88 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g0522 K16732 - csv:101215212 1238.79