Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g0531 ATGTCCGAATCATCTCCCTCTGATCATAATCCCTCTCCCTCTGCTGCCAAGCTCCGCAAGATCCCTCCCATTCCCATTCGGCGCGATTCCATACCCAATGCCGGAGACTCCGATTCCTATCATGAAAACGATGCTCCCGAGGATCAACCTCTTCAACCTGACGATTCCTCCATCATTATGGCCTCCTCTCTTGGGTTGAATCACATTCGTACGCGTTCTGCTCCTTTGCCGTTACGAACCTCTGCTGTTGGCACGCCCTCCAATTTGGGAGATAATTCTAGAAATAATGTTGTCTCTAGTGAGACCGAGTCCGAGCCAAAAGTTTCCTCCATTGAACAAGGAAAAAAAGTTCTTTGGAGTCAATCGAAATCGTTCAGATATCCTACATCTCTGAATCATGATCTTGAGGGCAATCATGTAGCGTTTGGAAAGGAAATTCAGTCTCCACGATTCCGTGCCATACTGCGTGTAACTAGTGGAAGAAGGAGGAGAACCCCGGATATCAAAAGCTTCTCTCACGAGCTCAATTCAAAGGGAGTTCGCCCTTTTCCACTTTGGAAACCTCGGGCATTTGGGCATTTGGAAGAGATCATGGTGGCTATCAGAGCAAAATTTGACAGATTGAAGGATGATGTGAATTACGAATTGGGCATTTTTGCTGGAGATCTCGTAGATAAACTTGAAAAGACAGACCAGTCTCAGCCTGAACTAAAAGAGGGTTTGGAGGACTTATTGGTGGTTGCTCGGAAATGTGCGACAATGTCGCCTACTGAATTCTGGACGAAAGGTGAAGGGATTGTCCAAAATCTAGACGATCGGCGGCAGGAGCTGTCGTTAGGGATTCTTAAGCAAACCCATACCCGCCTTCTCTTCATCTTGACACGATGTACTCGGCTTATTCAGTTCAGAAAGGAGAGTGGTTATGAAGATGAACACATTTTGGGTCTTCATCAACTTAGTGATCTAGGAATTTATCCAGAGAAACTTAGGCAGCTCGAACAACTTGACTTTAGTGATCCATTGATTGTGAAAGAAGCAATTGAGCAGCAGCTAAAGTTGGTTGGTAAGGATCAAGCCAGTCGACTGGTGAAGCAAGATTTAGGCCAAAGTTTTAGTACTAGTGCTGGAAATGTCGAGCTGGACTCTTCCTTAAGTGTTGATTCATCTACAAGCATGTATAGGATGGCATCCTGGAAAAAGCTACCATCAGCAGCTGAGAAGAACCGGAAAGACTCTGACTCCACTGGAACACCTTCCAAGGATAAACTTGAACTGTTGCATGTACATGAAGCTAAGACCGGGAGCAATAACCAATTAGATACCCCATCTAGTCATATTGCGCATTCAGAAGCACCTCCTAAAGAACAAAAAGTATCTTGGGGAATATGGGGTTTTCATCAAAATGCCACTTTTGAGAATTTGATGATTTGTCGGATTTGTGAGGTTGAAATTCCGACCATTCATGTTGAGGAGCATTCTCGAATATGTACAATTGCCGATAGGTGTGATTTGAAAGGTTTAACTGTGAATGAGCGCCTTGAACGGGTTGCTACAGCTCTTGAAAAGATACTAGAGTCTTGGACGCCTAAAAGTACACCAAGAAGTTGTGATACTTCATGTGGAAATTTTGATACCGTCAAGGTTTCTACATCAAGTATGCAAGAAGAGGTTTTTGAGCTGTCATCTAAAGGAATCAATTTGTCAAGTCGAAACTCTGAAGATCTGCTTGATTCCCTCCCTGTTACTGGCAACTCCTCCTTCATGGAAAGTCAGGATATTTTTCCTGATTCATCAGACAATCGACCATTTATTTTCACACCAGATCACAGTACAAAATCAACGTCAGCTGGAACTCTAACACCAAGATCACCTCTTTTAACACCTAGATCCAGCCAGATTGAATTGTTGTTGCATGGACGAAGAGCAATATCTGAACTTGAAAATTATCAGCAGATTTACAAATTATTGGATATTGTTCGTTCCATTGCAAATGTTAACAACTCTGGATACGGTGCATTGGAGTCCATGCTTGATCGATTAGAGGACCTTAAATATGCAATCCAGGACAGGAAGGTGGATGCCCTTGTTGTGGAGACTTTTGGAAGGCGCATAGAGAAGCTCTTGCAGGAAAAATATGTGCATCTCTGTGGGCAAATTGAAGATGATAAAGTAGACTCTTCACATGGCATGGTTGATGAAGAGAGTTCAGTGGAAGATGATACTGTTCGTAGTTTGCGTGCAAGTCCTGTTAATACATCAAAAGATCGAACATCTATTGAAGATTTTGAAATAATTAAACCAATTAGTAGAGGGGCATATGGCCGAGTTTTTCTTGCCAGAAAAAGAGCAACTGGAGACTTGTTTGCAATAAAGGTTTTAAAGAAGGCTGATATGATTCGCAAGAATGCAGTTGAAAGTATTTTGGCTGAACGTAATATCCTTATCTCAGTTCGCAACCCTTTTGTGGTCCGCTTTTTCTACTCTTTCACATGTAGGGAAAATCTGTATCTGGTCATGGAATACTTAAATGGAGGTGATATTTATTCCTTGCTGAGAAACCTAGGGTGCTTAGATGAAGATATGGCTCGTATTTATATCGCTGAAATTGTTCTTGCTTTGGAGTATTTGCACTCCTTAAATGTGATTCACAGAGACTTAAAGCCAGATAACTTATTGATTGGTCAAGATGGTCACATTAAGTTGACAGATTTTGGGCTCTCCAAGATTGGTCTTATCAATAGTACAGATGATTTCTCAGGTCCATCAATCAGTGGAACTTCTTCACTTGGAGACAATGGACCAACACCTCAATCTTTGTCAAAAAGAGAACACAGACAAAAGCATTCAGTGGTTGGTACTCCAGATTATTTGGCTCCTGAGATACTTCTGGGCATGGGACATGGTGTAACTGCGGATTGGTGGTCTGTTGGAGTAATTCTTTTTGAGATGCTTGTAGGAATACCGCCGTTCAATGCAGAAAATCCACAGCAAATTTTTGATAATATCATTAACAGAGACATACCGTGGCCCAAGGTGCCTGACGAGATGAGTTATGAAGCCCATGATTTGATTGACAAATTGTTGACTGAAAATTCAGTTCAAAGACTGGGAGCTACTGGAGCCAGAGAGGTGAAGGAACATCCTTTCTTCAAAGATATTAACTGGGAAACACTTGCAAGGCAGAAGGCCATGTTTATACCATCAGCAGAGCCACAGGATACAAGTTATTTCATGAGCCGTTATATATGGAATCCAGAAGATGAGGATTTTAATGGTGGAAGTGACTTTGATGATCATGATTTGACTGATACTTGCAGCAGTAGTTCATTTAGTAACCTTCAAGATGAAGACGGAGACGAATGTGGTAGTTTGGCTGACTTCTGTACATCAGCCCTTTCTGTGAAGTACTCGTTCAGCAATTTCTCTTTCAAGAATTTATCACAACTGGCTTCCATCAATTATGATTTGGTTGTGAAGAGCAGTCAAAACTCACCAGATCTCAGCTCTAGTGAGGCTTTTGACCCTTATATTATTACCGTCAGACTATCATTCATCCCCTGGTTTTTGGCCATTAATTACGCAACTGAAGTATCTATAATAATTATAGCAGAAAGTGTCATCTCTACAGTAGATGTTGCAAGTAGTAAGATCAATGCTAAGATGAGCAACGGAAACATTAAAACTAAATGCATCTATGCTGAAGCACAAGTTGTGGTGGAGGGCTTTGAGTTGCAGCTCGAGCTCAAGCGTCTTGTGTGGTTTTTTCGGATTGCCAGGGGCTTATTAATATGTTGA 3795 41.77 MSESSPSDHNPSPSAAKLRKIPPIPIRRDSIPNAGDSDSYHENDAPEDQPLQPDDSSIIMASSLGLNHIRTRSAPLPLRTSAVGTPSNLGDNSRNNVVSSETESEPKVSSIEQGKKVLWSQSKSFRYPTSLNHDLEGNHVAFGKEIQSPRFRAILRVTSGRRRRTPDIKSFSHELNSKGVRPFPLWKPRAFGHLEEIMVAIRAKFDRLKDDVNYELGIFAGDLVDKLEKTDQSQPELKEGLEDLLVVARKCATMSPTEFWTKGEGIVQNLDDRRQELSLGILKQTHTRLLFILTRCTRLIQFRKESGYEDEHILGLHQLSDLGIYPEKLRQLEQLDFSDPLIVKEAIEQQLKLVGKDQASRLVKQDLGQSFSTSAGNVELDSSLSVDSSTSMYRMASWKKLPSAAEKNRKDSDSTGTPSKDKLELLHVHEAKTGSNNQLDTPSSHIAHSEAPPKEQKVSWGIWGFHQNATFENLMICRICEVEIPTIHVEEHSRICTIADRCDLKGLTVNERLERVATALEKILESWTPKSTPRSCDTSCGNFDTVKVSTSSMQEEVFELSSKGINLSSRNSEDLLDSLPVTGNSSFMESQDIFPDSSDNRPFIFTPDHSTKSTSAGTLTPRSPLLTPRSSQIELLLHGRRAISELENYQQIYKLLDIVRSIANVNNSGYGALESMLDRLEDLKYAIQDRKVDALVVETFGRRIEKLLQEKYVHLCGQIEDDKVDSSHGMVDEESSVEDDTVRSLRASPVNTSKDRTSIEDFEIIKPISRGAYGRVFLARKRATGDLFAIKVLKKADMIRKNAVESILAERNILISVRNPFVVRFFYSFTCRENLYLVMEYLNGGDIYSLLRNLGCLDEDMARIYIAEIVLALEYLHSLNVIHRDLKPDNLLIGQDGHIKLTDFGLSKIGLINSTDDFSGPSISGTSSLGDNGPTPQSLSKREHRQKHSVVGTPDYLAPEILLGMGHGVTADWWSVGVILFEMLVGIPPFNAENPQQIFDNIINRDIPWPKVPDEMSYEAHDLIDKLLTENSVQRLGATGAREVKEHPFFKDINWETLARQKAMFIPSAEPQDTSYFMSRYIWNPEDEDFNGGSDFDDHDLTDTCSSSSFSNLQDEDGDECGSLADFCTSALSVKYSFSNFSFKNLSQLASINYDLVVKSSQNSPDLSSSEAFDPYIITVRLSFIPWFLAINYATEVSIIIIAESVISTVDVASSKINAKMSNGNIKTKCIYAEAQVVVEGFELQLELKRLVWFFRIARGLLIC 1264
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
1 5258972 5272212 + ClG42_01g0053100.10 Clacu01g0531 239915
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g0531 1264 MobiDBLite consensus disorder prediction 923 937 - -
Clacu01g0531 1264 MobiDBLite consensus disorder prediction 433 452 - -
Clacu01g0531 1264 Gene3D Phosphorylase Kinase; domain 1 760 1077 - -
Clacu01g0531 1264 Pfam Protein kinase domain 763 1050 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu01g0531 1264 PANTHER SERINE/THREONINE-PROTEIN KINASE 471 1145 IPR050236 GO:0004674(PANTHER)|GO:0018105(PANTHER)|GO:0035556(PANTHER)
Clacu01g0531 1264 MobiDBLite consensus disorder prediction 923 948 - -
Clacu01g0531 1264 CDD STKc_MAST_like 768 1055 - -
Clacu01g0531 1264 FunFam probable serine/threonine protein kinase IREH1 760 849 - -
Clacu01g0531 1264 SMART serkin_6 762 1050 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu01g0531 1264 MobiDBLite consensus disorder prediction 78 107 - -
Clacu01g0531 1264 SUPERFAMILY Protein kinase-like (PK-like) 759 1081 IPR011009 -
Clacu01g0531 1264 MobiDBLite consensus disorder prediction 1 55 - -
Clacu01g0531 1264 ProSiteProfiles Protein kinase domain profile. 762 1050 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu01g0531 1264 MobiDBLite consensus disorder prediction 77 109 - -
Clacu01g0531 1264 Gene3D Transferase(Phosphotransferase) domain 1 846 1068 - -
Clacu01g0531 1264 ProSitePatterns Serine/Threonine protein kinases active-site signature. 881 893 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu01g0531 1264 ProSiteProfiles AGC-kinase C-terminal domain profile. 1051 1153 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0531 Clacu-Chr1:5258972 Clacu04g1346 Clacu-Chr4:27372354 0.00E+00 dispersed
Clacu01g0531 Clacu-Chr1:5258972 Clacu03g1579 Clacu-Chr3:29358800 7.20E-68 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73228 PF00069 Pkinase 5.40E-64 CL0016 Clacu PK
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g0531 K08789 - csv:101210442 2075.44