Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g0543 ATGGTTCGAGGAAAAGTAGAGATGAAACGAATTGAAAATTCGACAAGTCGTCAAGTGACATTCTCAAAGAGACGAAATGGGCTTCTGAAAAAAGCTTATGAATTGTCTGTTCTTTGTGATGCTGAAGTTTCTGTCATAATTTTCTCCCAAAAAGGAAGGCTCTATGAGTTCTCAAGCTCCGACATGCAAAAGACAATTGAACGGTACCGTAGCTATGGGAAAGATGGACAAACCAACCCTTTTCGATCAGAAGGATATATGCAGCAACTGAAGCAAGAAGCTGACATGACAGCAAAGAAAATCGAGCAACTTGAAAAATCACAAGAGAAGCTTTTGGGACGTGGGTTGGATTCTTGTTCCTTTGAGGAACTTCGAGGGATTGAAAGACAGTTGGTACATAGCTTAACCCGTATTAGAGAAACCAAGGCTCAGCTATTCAAGGAGCAGAAAGAGAAGCTGATTGAAAAGGGGAAACTCCTTTTAGAAGAAAATCTAAAGTTATCTGCAAAGTGTGGTACTAAGCCGTGGCAAGAAGGTGGTTTTGAAGGAGAGGGAGGCATAATGAGCAATTTATGCAGCCAAAGTAGCCAAGGTCCTGACATGCAGACTGAATTGTTCATTGGATTGCCTTGCTCATAA 639 41.31 MVRGKVEMKRIENSTSRQVTFSKRRNGLLKKAYELSVLCDAEVSVIIFSQKGRLYEFSSSDMQKTIERYRSYGKDGQTNPFRSEGYMQQLKQEADMTAKKIEQLEKSQEKLLGRGLDSCSFEELRGIERQLVHSLTRIRETKAQLFKEQKEKLIEKGKLLLEENLKLSAKCGTKPWQEGGFEGEGGIMSNLCSQSSQGPDMQTELFIGLPCS 212
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5438381 5452326 - ClG42_01g0054300.10 Clacu01g0543 239927
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g0543 212 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu01g0543 212 Coils Coil 87 107 - -
Clacu01g0543 212 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu01g0543 212 Pfam K-box region 88 171 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Clacu01g0543 212 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu01g0543 212 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu01g0543 212 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Clacu01g0543 212 SUPERFAMILY SRF-like 3 78 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu01g0543 212 Gene3D - 13 107 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu01g0543 212 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu01g0543 212 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu01g0543 212 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Clacu01g0543 212 CDD MADS_MEF2_like 3 78 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Clacu01g0543 212 FunFam Agamous-like MADS-box protein AGL13 13 78 - -
Clacu01g0543 212 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 192 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0543 Clacu-Chr1:5438381 Clacu06g0023 Clacu-Chr6:466375 1.40E-45 dispersed
Clacu01g0543 Clacu-Chr1:5438381 Clacu05g0909 Clacu-Chr5:8046292 7.80E-52 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46967 PF01486 K-box 2.80E-20 No_clan Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g0543 - - - 0.0