Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g0546 ATGTCTTCTACTCCAATTCTCTCTCTCCCTCTCACTCTTAAGCCTTCTCATTTCCCCAATCACACTCTCAAACTTCCCAATTCCTCTCTCTCCCTGCTCCGCCCATCAACTTCCTTCGCGCCATTTTCGACTCCACCACCTCTCAAGCCCTTTAATGGTTCAATCAAAACTAGTAGCAATTCTACTTTCGCCTATGTCACGGGCCCTGCGTCGGACCCTAATGTCAGCGAGTCTGACCCCAAGGTGGACGACGCCTCCGATTCTCAGGTTCGGGTTGTTGGGGTCTTGAATTGGGGGCTCTTCTGGAGGCTTTTGACCAAGCATAAGCTACGGCTTCTAGTTTCTTTGCTTACTCTTGTTTGCTGCAGTACTTGTACTCTTTCAATGCCCTTTTTCTCTGGTAGATTTTTTGAGGTACTTATAGGTGCGAAACCTGGGTCTCTGTGGAGGCTTCTGAGTACGGTTGGAATTTTATATGCATTGGAGCCAATATTAACGGTTTTATTTGTCACAAACATGAATTTCATGTGGGAGAAGGTTATGTCAAGATTAAGAGCCCAGATTTTTGGAAGGTTGCTGATTCAGAAGGTGGAATTCTTTGACAGATACAAGGTTGGTGAAATTACCGGATTGTTAACTTCTGATTTGGGATCTCTTAAGGATGTGAGGCAAGCAACTCTTCACCAAGTACAAGTGATTGGAACAATATGTATATTATTTGCTTTGTCCCCCCAGCTTGCACCTATTCTTGGCCTGCTGATGCTCACAGTATCTGTTTCAGTAGCTGTATACAAGCGATCAACTATTCCTGTATTTAAAGCACATGGATTAGCCCAAGCATCCATGGCTGATTGTGCAACTGAGACATTCTCTGCAATTCGTACTGTGAGATCCTTTGGCGGTGAAAAGCGACAAATGTTCAATTTTGGTCGTCAGGTTATTGCATATGAGGGTAGTGGCATATCACTTGGGACTTATAAATCTCTGAATGAATCTTTAACTAGAGTTGCTGTTTATGTTTCGCTTATGACATTATATTGGCTTGGAGGAGACAAAGTGAAAGCGGGTGAACTTTCTGTTGGAACCATGGCTTCTTTTATTGGATATACTTTCACGTTAACATTTGCTGTTCAAGGATTGGTAAATTCATTTGGAGATCTCCGCCGAACTTTTGCTGCTGTTGAAAGAATTAATTCTGTTTTAAATGAAGAGGTTGATGAAGCCCTTGCATATGGGTTAGAAAAAGAGATGCAACAAAAAGAATTTAGATATAAGTTGCTATTCTCCAGAGATACTGATGAAAGTCCAGTGAAAACACAGTACATGGCAGCCCTAAAATCTTCTAGCAACGTTATCAATCTTGCTTGGTCTGGTGATATTTGTCTTGAAGATGTGTGCTTTTCTTACCCTTTGAGACCGGACGTTGACATTCTTAGCGGTTTGAATTTAACCCTTAAATGTGGAACCATAACGGCGCTAGTGGGCCCTAGTGGAGCAGGAAAGAGTACAATAGTGCAGCTATTGGCACGTTTTTATGAGCCAAAGAAAGGGCAGATAAAAGTTTCTGGTGAAGATATTCGAGCATTTGACAAGAGAGAATGGGCTCGGGCTGTTTCAATAGTGAATCAAGAACCCGTTCTTTTTTCGGTGTCTGTTGGAGAGAATATTGCATATGGACTTCCAGATGATAACGTAACAAAGGATGAAGTTATAAAGGCAGCCAAAGCTGCAAACGCTCATGACTTCATTATTTCACTTCCTCAGGGCTATGACACACCAGTTGGTGAACGCGGAGGCCTTCTCAGTGGTGGCCAGCGACAGAGAATTACAATTGCGAGAGCTTTGCTTAAGAATGCTCCAATCCTTATACTTGATGAGGCGACCAGTGCCCTAGATGCAGTTAGTGAGCGACTAGTCCAGGACGCGCTGAACCATCTAATGAAGGGAAGGACAACATTGGTGATTGCACACCGATTGAGTACCGTTCAAAATGCCCATCAAATTGCATTTTGTTCTGATGGAAAAATTGTAGAGCTGGGAACTCATTTGGAACTACTGGCTCGGAAAGAGTGA 2073 42.98 MSSTPILSLPLTLKPSHFPNHTLKLPNSSLSLLRPSTSFAPFSTPPPLKPFNGSIKTSSNSTFAYVTGPASDPNVSESDPKVDDASDSQVRVVGVLNWGLFWRLLTKHKLRLLVSLLTLVCCSTCTLSMPFFSGRFFEVLIGAKPGSLWRLLSTVGILYALEPILTVLFVTNMNFMWEKVMSRLRAQIFGRLLIQKVEFFDRYKVGEITGLLTSDLGSLKDVRQATLHQVQVIGTICILFALSPQLAPILGLLMLTVSVSVAVYKRSTIPVFKAHGLAQASMADCATETFSAIRTVRSFGGEKRQMFNFGRQVIAYEGSGISLGTYKSLNESLTRVAVYVSLMTLYWLGGDKVKAGELSVGTMASFIGYTFTLTFAVQGLVNSFGDLRRTFAAVERINSVLNEEVDEALAYGLEKEMQQKEFRYKLLFSRDTDESPVKTQYMAALKSSSNVINLAWSGDICLEDVCFSYPLRPDVDILSGLNLTLKCGTITALVGPSGAGKSTIVQLLARFYEPKKGQIKVSGEDIRAFDKREWARAVSIVNQEPVLFSVSVGENIAYGLPDDNVTKDEVIKAAKAANAHDFIISLPQGYDTPVGERGGLLSGGQRQRITIARALLKNAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQNAHQIAFCSDGKIVELGTHLELLARKE 690
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5485805 5494167 + ClG42_01g0054600.10 Clacu01g0546 239930
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g0546 690 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 460 690 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Clacu01g0546 690 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 451 689 IPR027417 -
Clacu01g0546 690 SUPERFAMILY ABC transporter transmembrane region 101 406 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Clacu01g0546 690 Gene3D - 458 689 IPR027417 -
Clacu01g0546 690 CDD ABC_6TM_TAP_ABCB8_10_like 120 397 - -
Clacu01g0546 690 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 113 389 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Clacu01g0546 690 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 93 688 IPR039421 GO:0005743(PANTHER)|GO:0015421(PANTHER)|GO:0090374(PANTHER)
Clacu01g0546 690 ProSitePatterns ABC transporters family signature. 601 615 IPR017871 GO:0005524(InterPro)|GO:0016887(InterPro)
Clacu01g0546 690 Gene3D ABC transporter type 1, transmembrane domain 97 407 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Clacu01g0546 690 FunFam ATP-binding cassette sub-family B member 8, mitochondrial 458 690 - -
Clacu01g0546 690 Pfam ABC transporter transmembrane region 112 376 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Clacu01g0546 690 Pfam ABC transporter 478 629 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Clacu01g0546 690 CDD ABC_MTABC3_MDL1_MDL2 460 690 - -
Clacu01g0546 690 SMART AAA_5 487 681 IPR003593 GO:0016887(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0546 Clacu-Chr1:5485805 Clacu04g1226 Clacu-Chr4:26429196 6.70E-84 dispersed
Clacu11g0406 Clacu-Chr11:3791676 Clacu01g0546 Clacu-Chr1:5485805 3.20E-08 dispersed
Clacu01g0546 Clacu-Chr1:5485805 Clacu10g1983 Clacu-Chr10:33363006 6.70E-68 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g0546 K05657 - csv:101211598 1177.54