Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g0551 ATGGCTAAGGAAGAAGTTAGCACCAGTGATGAAGCTGACCGTCGTCTACCTGCACACTCGAGCGCCGAACGCGACTCACTGGCTGCTTCGACATCGGCGTCTGTAGGATCGCTGTGGCATCCTAGGCAACTCGGTTTTAGTCCTTATTTGCACCGGGAAAATGCTGCTGCAAAACCCCAAGATTCGCGTTTTGCCGCCAGAATACCCCTGGTTGCTAGATTAACCAAGGACATAGTTGAAACATACAGAAAATGCAACCCAGAGTTTAAATATTCAGAAGAGTTAAATCTGAAGAGATTTTTGACGAGCCCATCAATTGGAGTCCTCAATGATGGCTATGATAATGTGAACTCAGATCTTATCTTGGCGGTGAACTCTGTTTTACTCAATTTTGATACGCAACGGAGATATGTTGTCAAAGATCTACTTGGTCATGGGACTTTTGGGCAGGTTGCTAAATGCTGGGTTGCGGAAACTAACAGCTTTGTAGCTGTGAAGATCATAAAAAACCAACCTGCGTATTATCAGCAAGCACTAGTTGAAGTATCTATTTTATCATTGTTAAATCAGAAGTATGATCCTGAGGACAAGCATCATATTGTCCGTATTTATGATTACTTTGTATATCAACGTCATCTGTGCATTTGCTTTGAGCTGCTTGATACAAATTTGTATGAGCTTATCAAGATCAATCATTTTAGGGGGTTGTCATTGAGCATTGTTCAAATGCTGTCCAAGCAGATCTTATGTGGGCTTGCTCTATTAAAAGATGCTGGCATTATTCATTGTGATTTAAAGCCGGAAAATATTCTTTTATGCACAAGCAGCGCGAAGCCGGCAGAAATTAAGATAATCGACTTCGGATCAGCTTGCATGGAAGACCGCACTGTTTATTCTTACATCCAGAGCCGCTACTACAGGTCTCCAGAAGTTCTGCTCGGATATCAATACACTACAGCTATTGATATGTGGTCCTTTGGTTGCATAGTTGCTGAGTTGTTTCTTGGACTGCCATTATTTCCAGGGGCTTCTGAGTTTGATTTATTGAGGCGGATGATCGACATTCTTGGGGGACAGCCTCCGGATTATGTTCTGAAGGAGGCAAAACATACTAGCAAATTCTTTAAGTTTATTGGAGGTTTCCATAATGAAAACGGTGAAATTTGTGCAAGTGGCCGAAGTACTTTTCAAGCATTAAAAGCAGATGAATATGAAGCTAGAGAGATGAAAAAGCCTTCAATTGGAAAAGAGTATTTCAATCGAATGGACCTTGAAGCAATTGTGACTAACTACCCTTATAGAAAAAACTTGGCTGAGGAAGATATTAGAAAAGAGAGTCAAGTACGATTGGCCTTAATTGATTTCCTTAAGGGCCTCGTGGAGTTTGATCCTGCAAAAAGGTGGTCACCTTTCCAGGCCTCCAAACACCCTTTTGTGACAGGAGAGCCTTTCACATGCCCATACACGCCTCCACCAGAGTCCCGGCGTTTGCCTGTTTCACAGAACATAAAGGTGGATGACCATCATCCAGGTGGAGGGCATTGGTTTGCAGCTGGTCTCTCTCCCAATATTGCAGGTAGGAACAGAGTTCTTCAGAGCAGCCCACACTTTCAAATGGTACCATATGCCCATGCCAACAGTTATGGGAGTGTTGGAAGTCATGGTAGCTACAATGAAAGTATTGGGTTTGGGAACAGCTATGGAAGTTACGGGGACAATGGTATGCTTGCATATTATTCGCCTGTTGGTCCATCTGGAATGAATATGCATCCACAAGGAAGAATATCAGTGCTTGCAAGTAGCCCAGATACTCGGCAGAGGATTTTCCAATTATCACATGGTAATGGGATTGGTGTGAGCCCATCAACTGGGAACTTTGCACCACTGCCCCTAGGCACGAGTCCCTCGCAGTTTACTCCACCAAGTAGTTATGGTCAAGTTTCAGTGGGCTCTCCTGGACATTATGGGCCAACTTCTCCTGCAAGGAGTAGCTGTCAGGGGTCGCCCCTGGGAAAAATGGCTACAGTTGGTCAATTTAATAGGAGGAAATTTTGGGATTACTCTGGTACTCATGATGGTTCTTCATCTTCGCACTGCCAAGGGCAATCTACTGAAGGCACAAGTTACAGTCAAGCAGATGGGAACTCTTTACATGGTTGCTCACCATCTCATTTGCCACCGAGTAGCAATGCCACCAGCTGGAAGCAGCAGCAAGTAGGTAGTGGAAGCTCTGCTGGATACCCTACCATTCAGAGTATGCCAGGATCTCATTTGCCTGGATCAAATATGCAATTTTCACAACCAACGGATGTGGTTCGTAATAAGTCTGAATTGCCTGATCCTGGAGATTGGGATCCCAATTATAGTGATGAACTACTCCTCCAAGATGATGGTGATTCAAATGTCAGCAGCATTTTGACTGATTTTAGCAACATGCATGTGGGTTCATCAAATCCATCTACTGGGATTGGAAGATTTAGTATGCCAAGCGCTAGTTTGAATTTAACCTCACAAAGAAAAACCGGACCTGTCCAAGCATTTCCGCATGTAGAGGTGGGTAGTCCGCCCTCAGCTCAAGATTTGCACACTGGATATGCTCGTTCCTCATCAAAGCATTCCCATTTCATGCCTCATAATTCCCCAAGCCGATTGGGACAGCAACCTGTTCAGCGGTTCAATCAAGGGAGAAGCCCAAACGTTCGAGGTTACGAGTGGAACCCTGTGAAGATCCAACCACCCCTTCCCAGCTATAATTCTGGAGGCCCACGTTCTCCTGGAAGTGGCTCCTTCAGCAGTGGCATGTCATGGGGGTTTAGAGCGAATCAGCCTGTTACAAGCATTCCTCCAGCATCATCTCGTGGAAGAAAAGACTATGGGAGGATCTAG 2886 44.73 MAKEEVSTSDEADRRLPAHSSAERDSLAASTSASVGSLWHPRQLGFSPYLHRENAAAKPQDSRFAARIPLVARLTKDIVETYRKCNPEFKYSEELNLKRFLTSPSIGVLNDGYDNVNSDLILAVNSVLLNFDTQRRYVVKDLLGHGTFGQVAKCWVAETNSFVAVKIIKNQPAYYQQALVEVSILSLLNQKYDPEDKHHIVRIYDYFVYQRHLCICFELLDTNLYELIKINHFRGLSLSIVQMLSKQILCGLALLKDAGIIHCDLKPENILLCTSSAKPAEIKIIDFGSACMEDRTVYSYIQSRYYRSPEVLLGYQYTTAIDMWSFGCIVAELFLGLPLFPGASEFDLLRRMIDILGGQPPDYVLKEAKHTSKFFKFIGGFHNENGEICASGRSTFQALKADEYEAREMKKPSIGKEYFNRMDLEAIVTNYPYRKNLAEEDIRKESQVRLALIDFLKGLVEFDPAKRWSPFQASKHPFVTGEPFTCPYTPPPESRRLPVSQNIKVDDHHPGGGHWFAAGLSPNIAGRNRVLQSSPHFQMVPYAHANSYGSVGSHGSYNESIGFGNSYGSYGDNGMLAYYSPVGPSGMNMHPQGRISVLASSPDTRQRIFQLSHGNGIGVSPSTGNFAPLPLGTSPSQFTPPSSYGQVSVGSPGHYGPTSPARSSCQGSPLGKMATVGQFNRRKFWDYSGTHDGSSSSHCQGQSTEGTSYSQADGNSLHGCSPSHLPPSSNATSWKQQQVGSGSSAGYPTIQSMPGSHLPGSNMQFSQPTDVVRNKSELPDPGDWDPNYSDELLLQDDGDSNVSSILTDFSNMHVGSSNPSTGIGRFSMPSASLNLTSQRKTGPVQAFPHVEVGSPPSAQDLHTGYARSSSKHSHFMPHNSPSRLGQQPVQRFNQGRSPNVRGYEWNPVKIQPPLPSYNSGGPRSPGSGSFSSGMSWGFRANQPVTSIPPASSRGRKDYGRI 961
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5532342 5551425 + ClG42_01g0055100.10 Clacu01g0551 239935

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g0551 961 Gene3D Phosphorylase Kinase; domain 1 102 217 - -
Clacu01g0551 961 MobiDBLite consensus disorder prediction 1 29 - -
Clacu01g0551 961 FunFam Dual specificity tyrosine-phosphorylation-regulated kinase 1A 100 216 - -
Clacu01g0551 961 Gene3D Transferase(Phosphotransferase) domain 1 218 480 - -
Clacu01g0551 961 ProSitePatterns Protein kinases ATP-binding region signature. 143 166 IPR017441 GO:0005524(InterPro)
Clacu01g0551 961 MobiDBLite consensus disorder prediction 920 949 - -
Clacu01g0551 961 MobiDBLite consensus disorder prediction 1 21 - -
Clacu01g0551 961 ProSitePatterns Serine/Threonine protein kinases active-site signature. 260 272 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu01g0551 961 MobiDBLite consensus disorder prediction 861 900 - -
Clacu01g0551 961 SUPERFAMILY Protein kinase-like (PK-like) 131 501 IPR011009 -
Clacu01g0551 961 PANTHER DUAL SPECIFICITY PROTEIN KINASE 54 484 IPR050494 GO:0004674(PANTHER)|GO:0004713(PANTHER)|GO:0005737(PANTHER)|GO:0018105(PANTHER)|GO:0018107(PANTHER)
Clacu01g0551 961 ProSiteProfiles Protein kinase domain profile. 137 479 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu01g0551 961 MobiDBLite consensus disorder prediction 855 961 - -
Clacu01g0551 961 SMART serkin_6 137 479 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu01g0551 961 CDD PKc_YAK1 137 479 - -
Clacu01g0551 961 Pfam Protein kinase domain 137 479 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu01g0551 961 MobiDBLite consensus disorder prediction 631 672 - -
Clacu01g0551 961 MobiDBLite consensus disorder prediction 689 767 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g0551 K18670 - - csv:101210441 1848.17
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0551 Clacu-Chr1:5532342 Clacu01g2160 Clacu-Chr1:33091639 1.00E-29 dispersed
Clacu04g1337 Clacu-Chr4:27227881 Clacu01g0551 Clacu-Chr1:5532342 2.00E-48 transposed
Clacu11g0762 Clacu-Chr11:7460529 Clacu01g0551 Clacu-Chr1:5532342 9.80E-51 transposed
Clacu01g0551 Clacu-Chr1:5532342 Clacu05g2479 Clacu-Chr5:32901186 2.20E-37 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g291 . . Bda01g01858 . . . Bma14g01704 . . Cmo18g01042 . Cma18g01030 . Car18g00952 Sed14g1516 Cpe09g00291 . Bhi07g01339 Tan04g0874 Cmetu10g1483 Lac13g0482 Hepe01g1204 . . Cla05g02311 Cam05g2484 . . Clacu05g2479 Cmu05g2340 . . . Cone6ag0456 Cone9ag0467 Lsi04g00266 Csa05g02600 Chy10g01135 Cme10g00272 . Blo11g00836 . . Bpe11g01696 . . . . . . . Cma15g01400 . Car15g01262 Cpe13g00051 . . . . . . . . Cla01g00533 Cam01g0553 Cec01g0545 Cco01g0569 Clacu01g0551 Cmu01g0524 Cre09g1986 Lsi09g00576 . Chy09g00937 Cme09g01465
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006755 0 3 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73229 PF00069 Pkinase 4.80E-50 CL0016 Clacu PK