Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g0568 ATGTATATAACTGACCTCCCCTTTCTTCCTTCTTCTTCCTCTTTCTCTCTCTCGGATTTCAATTCTCCGAATTCACAGCGAAGCGAAGGCTTTAGCTTCCATTACTTGTCTGGTTTCAGCCTCTTTTCCGCTTTTCAAGGCGAGATATTGGCTCTTGAAAGTGGTTATTTGAATTACGTTTCTGGTCTTCTGCATATTGTTGAAATAGCAACCAGGATCGCAGATCACACGCACATTGCAATCTGGTGGTTAAGAACTTTGAAGAGACTGGCTCTAGAGAGTTACTTGGACGCTGGCCACCAAGGATTGGTGCCCCCAATGGCAGCTTCTCGGGTGGCTGGAGGATTAGCGCAATCTTCCTCAAGTTCTGGGATTTTTTTCCAAGGAGATGGGCAGTCCAAGGCTACTGTTAAATCTCACTTGGGCTCATCTTATGGAAACTCATCAAATTCAATTCTAGGAACTGGCCATTCAAATTTGGGTCCAGTTTCTGGGGACACAAATGGTATGTTTAATAGTGTGGCAAACTCAGGACCAAGTGTTGGGGCAAGTTCTTTGGTTACAGATGCAAATTCTGCTCTTTCAGGTGGGCCTCACTTGCAGAGAAGTCCAAGCATGAATGCAGAATCATACATGCGATTACCTACATCGCCTATGTCTTTTACATCAAATAACATGAGTGTCTCAGGTGCATCACTCATTGATGCATCTTCTGTACTGCAGCACAATTCTCAGCAGGATCATAATGCTTCCCAATTGCCACAGAACCAGCAACAGGCCCGACAAGTTTCTTCAGGTGATGCGTTACTGTCTAATTCACAAACTGTCCAAGCTTCACTCCCCATGGGTGCACGTGTCTCTGGATCTCTCATGACAGATCCCAATAGTTATTCTCAGTCACAGAAGAAACCACGCTTGGATATTAAGCAGGATGATTTTCTGCAACAGCAGGTACTACAACAGCTACTGCAGAGACAAGATTCCATGCAATTGCAAGGTCGTAATACACCTCAGTTACAAGCAGCATTATTTCAGCAGCAACAGAGATTACGACAACAGCAACAAATTTTTCAGTCTTTACCTCCTTTGCAGAGAGCTCATATGCAGCAGCAGCAGCAGATACAGTTGAGGCAGCAACTTCAGCAACAGGCAATACAGCCTGTAAATGCTATGAAGCGGCCTCATGATGGTGGTGTGTGTGCTCGGCGGCTAATGCAGTACCTATACCATCAGCGTCAAAGGCCTGCTGATAATAGTATTGCCTATTGGAGGAAGTTCGTGACTGAATATTATTCCCCTCGTGCAAAGAAAAGATGGTGTTTGTCATTATATAACAATGTTGGGCATCATGCACTTGGTGTCTTCCCTCAAGCAGCCATGGATGCATGGCAGTGTGACATTTGTGGTTCAAAATCAGGACGGGGATTTGAGGCTTCCTTTGAAGTGCTTCCTAGGCTTAATGAGATCAAATTTGGCAGTGGAGTCATTGATGAGCTATTGTTCTTGGATATGCCACGGGAATTCAGATATTCATCTGGAATCATGATGTTAGAATATGGAAAAGCAGTACAAGAGAGTGTATATGAGCAACTTCGTGTTGTTCGTGAGGGACAGCTTCGTATCATATTTACTCATGAATTGAAGATATTGGCATGGGAATTTTGTGCAAGACGCCATGAAGAACTTCTTCCTCGTAGACTGGTTGCACCTCAGGTGAATCAGTTGGTCCAGGTGGCACAGAAATGCCAGAGCACTATTGCTGAAGGAGGATCTGATGGGGCTTCTCAGCAGGATTTACAAGCAAATAGTAATATGGTTTTGACAGCTGGGCAGCAGCTTGCCAAGAGTCTGGAGTTGCAGTCACTGAATGATTTGGGGTTCTCTAAAAGATACGTCAGATGCTTGCAGATATCAGAGGTTGTCAATAGCATGAAAGATTTGATTGATTTCTGTAGGGAGCAGAAAACCGGACCAGTTGAGGGTCTGAAAAGTTATCCTCAGCACGCCACAGCCAAGCTGCAGATGCAAAAAATGCAAGAGATTGAGCAGGTTGCTACTGCTCAGAGTCTGCCAACCGACCGTAACACCCTTAATCGAATGGTCGCGATGCATCCTGGGCTGAACAACCAAATGAATAGCCAAAATCAACTAGTCGGCAGAGGAACTTTGAGTGGTTCAGCACAAGCTGCGTTGGCATTGTCTAACTACCAGAATCTGCTAATGAGACAGAACTCCATGAATTCAACAAGTTCAAACCCACTCCAGCAGGAGACATCATCGTCATTCAATAACTCAAACCAGAGTCCTTCATCAAGCTTTCCTGGAACAACTGCTATAGCATCGGCACCGATGCAGACCTTGCCCAGCAGTGGTCTTTCAAGTCCTAATCTGCCTCAGCAGCAATCTCAAGTTCAACAGCAACTGCATCAGCGCCCAAACACCAACAACTTACTCGTGCAACATCATCCTCAGAGTACGCAAGGTAACAGTAACACTATGCAACATCAGATGATCCAGCAACTACTCCAGATATCTAATAACAGTGGGGGAGGACAACAGCAACCACTTTCTGGATCAAACACAAAAGCAAGCATTGCCGGAGCTTATACGGGATACGGAGGCAGCTCTTCTGTGGTGGCTGCAGGCACAGCCAATGCATCTGGTAGTAATACGCCTGCTCCAAGCCGAAGCAACAGTTTCAAAAGTGCTTCAACTGGTGACGTATCAGCAGCCGGTGCTCGTAGCAGTGGGTTCAACCAAAGAAGTGCAGATTTGGCACAAAATCTTCATTTGGATGAGGATATAATGCAGGATATAGCCCATGATTTTACAGATAATGGGTTTTTTAACAGTGATCTTGATGATAATATGTGCTTCACCTGGAAAGGTCAACTAACATAA 2901 45.02 MYITDLPFLPSSSSFSLSDFNSPNSQRSEGFSFHYLSGFSLFSAFQGEILALESGYLNYVSGLLHIVEIATRIADHTHIAIWWLRTLKRLALESYLDAGHQGLVPPMAASRVAGGLAQSSSSSGIFFQGDGQSKATVKSHLGSSYGNSSNSILGTGHSNLGPVSGDTNGMFNSVANSGPSVGASSLVTDANSALSGGPHLQRSPSMNAESYMRLPTSPMSFTSNNMSVSGASLIDASSVLQHNSQQDHNASQLPQNQQQARQVSSGDALLSNSQTVQASLPMGARVSGSLMTDPNSYSQSQKKPRLDIKQDDFLQQQVLQQLLQRQDSMQLQGRNTPQLQAALFQQQQRLRQQQQIFQSLPPLQRAHMQQQQQIQLRQQLQQQAIQPVNAMKRPHDGGVCARRLMQYLYHQRQRPADNSIAYWRKFVTEYYSPRAKKRWCLSLYNNVGHHALGVFPQAAMDAWQCDICGSKSGRGFEASFEVLPRLNEIKFGSGVIDELLFLDMPREFRYSSGIMMLEYGKAVQESVYEQLRVVREGQLRIIFTHELKILAWEFCARRHEELLPRRLVAPQVNQLVQVAQKCQSTIAEGGSDGASQQDLQANSNMVLTAGQQLAKSLELQSLNDLGFSKRYVRCLQISEVVNSMKDLIDFCREQKTGPVEGLKSYPQHATAKLQMQKMQEIEQVATAQSLPTDRNTLNRMVAMHPGLNNQMNSQNQLVGRGTLSGSAQAALALSNYQNLLMRQNSMNSTSSNPLQQETSSSFNNSNQSPSSSFPGTTAIASAPMQTLPSSGLSSPNLPQQQSQVQQQLHQRPNTNNLLVQHHPQSTQGNSNTMQHQMIQQLLQISNNSGGGQQQPLSGSNTKASIAGAYTGYGGSSSVVAAGTANASGSNTPAPSRSNSFKSASTGDVSAAGARSSGFNQRSADLAQNLHLDEDIMQDIAHDFTDNGFFNSDLDDNMCFTWKGQLT 966
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5719122 5732097 - ClG42_01g0056800.10 Clacu01g0568 239952
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g0568 966 MobiDBLite consensus disorder prediction 289 303 - -
Clacu01g0568 966 Pfam LIM-domain binding protein 403 663 IPR029005 -
Clacu01g0568 966 PANTHER LIM DOMAIN-BINDING PROTEIN 121 952 IPR029005 GO:0000122(PANTHER)|GO:0005634(PANTHER)|GO:0005667(PANTHER)|GO:0045944(PANTHER)
Clacu01g0568 966 MobiDBLite consensus disorder prediction 285 305 - -
Clacu01g0568 966 MobiDBLite consensus disorder prediction 241 268 - -
Clacu01g0568 966 MobiDBLite consensus disorder prediction 884 917 - -
Clacu01g0568 966 MobiDBLite consensus disorder prediction 745 810 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0568 Clacu-Chr1:5719122 Clacu05g0928 Clacu-Chr5:8227089 5.40E-265 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g0568 - - - 0.0