Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g0571 ATGGATTTTTCCGATTCCTTTTCTTCCTCCCCACTTTGCCACCGCTCCAATCACTCCGACGAGGAGCTTCTTTTGGCGTCCCGATATCCGAAGAAGAGAGCTGGCAGAAAGAAGTTTAAGGAAACTCGCCACCCTATCTTCCGTGGGGTGCGACAGCGGAACTCCGGCAAGTGGGTTTGTGAAGTCAGAGAGCCCAATAAGAAGACTAGGATTTGGCTTGGCACTTTCCCCACTGCTGAGATGGCTGCTCGCGCTCACGATGTTGCTGCCATCGCTCTCCGTGGCCGCTCTGCTTGTCTTAATTTTGCTGATTCTGCCTCCACGCTTCCCGTTCCGGCTACTGTCGATCCTAAGGATATACAGAGGGCTGCGGCTCAGGCTGCAGACGCCTTCCGCCCTCCCGAGGATCAATTGAGGCCTGCCGTGGCCGCGGCGGAGGAGGAAGAGGTGTTTTATTTGGATGAGGAGGCGTTGTTTGGGATGCCGGGGTTGCTGGCGGATATGGCGGAGGCAATGCTTTTGCCGCCGCCCAATTGTGTGGGGAACGACAATGACGACTATGGGGTTAATTCTATGGATTTCGATGCCGACATGTCGTTGTGGAGTTACTCAATTTGA 618 54.69 MDFSDSFSSSPLCHRSNHSDEELLLASRYPKKRAGRKKFKETRHPIFRGVRQRNSGKWVCEVREPNKKTRIWLGTFPTAEMAARAHDVAAIALRGRSACLNFADSASTLPVPATVDPKDIQRAAAQAADAFRPPEDQLRPAVAAAEEEEVFYLDEEALFGMPGLLADMAEAMLLPPPNCVGNDNDDYGVNSMDFDADMSLWSYSI 205
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5786796 5787413 + ClG42_01g0057100.10 Clacu01g0571 239955
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g0571 205 CDD AP2 45 105 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu01g0571 205 Gene3D AP2/ERF domain 46 104 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu01g0571 205 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 5 203 IPR045277 GO:0003700(InterPro)
Clacu01g0571 205 PRINTS Ethylene responsive element binding protein signature 69 85 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu01g0571 205 PRINTS Ethylene responsive element binding protein signature 47 58 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu01g0571 205 Pfam AP2 domain 46 95 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu01g0571 205 SUPERFAMILY DNA-binding domain 46 105 IPR016177 GO:0003677(InterPro)
Clacu01g0571 205 FunFam Ethylene-responsive transcription factor 2 45 104 - -
Clacu01g0571 205 ProSiteProfiles AP2/ERF domain profile. 46 103 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Clacu01g0571 205 SMART rav1_2 46 109 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0314 Clacu-Chr1:3113053 Clacu01g0571 Clacu-Chr1:5786796 5.70E-56 dispersed
Clacu01g0571 Clacu-Chr1:5786796 Clacu10g1904 Clacu-Chr10:32694403 2.70E-33 dispersed
Clacu01g0571 Clacu-Chr1:5786796 Clacu05g0919 Clacu-Chr5:8126989 5.10E-64 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46968 PF00847 AP2 7.60E-15 CL0081 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g0571 - - - 0.0