Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g0581 CTTTTTGATTATCAGCACAATTTAGGACTTCTTTTGATAGAGAAGAAAGATTGGGCTTCAAAGTATGACCAACTAGGGCAAGATTTAGCAGAAACTGAGGAGATCTTCAAACGCGAACAATCAGCACATTTAATTGCATTATCTGAAGTTGAAACGAGGAGGGATAACTTGAAGAAAGCTCTAGCTGCTGAGAAGCAACATGTTTCTAGTCTTAAAAAGGCTTTATGTGAAGTAAATGAGGAACGTGCAGAAATCAAGCTTACGTCTCAGAAGAAGTTGGCTGATGCAAATGCTTTGATGCATGGAATTGAGGAGAAATCTTTGGAGTTGCAGAAAAAGTTGAATGCTGCTGAAGCCAAGCTTGCTGAGGTAAATAGGAAGAGTTCAGAGTTGGAGATGCGAATGCATGAAGTTGAAGCTCGTGAAAGTGTGCTTCAAACTGAGCAGATATCCTTAGTCACGGGGAAAGAAGCACATCAGGCGACCTCCCATAAAGAAAGAGAAAGCTTACGTAAGTTGCAGCAGAAGTTGCAGGAATGGGAAGAAAGACTGAGCAAGAATCGTGAATTGCTTAATGATAAAGAGCAGAAGGTAAATGAAAATAGCACGACTATGAAGCAGAAAGAGAAGGATCTTGAAGAGATGAAGAAGAAGATTGATCTGTCAAGTTCAGTCCTGAAAAGGAAGGAAGATAATGTAAATAGACGATTAGCAGATGTGGAAGCAAAAGAGAAGATGGAGATCGAGCAGCTGCTTGACGAGCAAAGAGTAATTCTACAGAAGAAGAAAGAAGAGTTTGAGTTACAATTGGAAGAAAAGCGGCAGTCTCTGGATAATGAAGGTAGTACAAGGATAGGAGCAATCAAAAGGAAGGATCTTGAAACTAATCATGAGAAAGAAAAGTTGGTGAAGCAAGAGCAAGCTTTGGAGAAAAAGATGCTTCGAGCAAAGGAGAAAGAGGGTGAGCTTGAACAAAAGATAAAGACGTTGAAATCAAAAGATAAGATCTTGAAAGCTGATGAGAGAAAGCTGGAGGTGGAAAGGTTGCAAATGCTAGCTGATAGAGAGAGCTTACAGTCTCTCATTAATGAGATTGAGGAAATGAGGACCGAAAATTCTCAGAAGGAGCGGCAATTTCATGAGGAGAGGGAGAAATTGCAGGTGATGAAAGAAGAGAGATCAGAGCACATTCGTTTACAGTGTCAATTGATGCAGGAAATTGAGAGTTACAGGCTTCAGAACAAAATAGTTACGAAAGAACATGAGGATCTTAAGCAGGAAAGGGTCAAATTTGAGAGAGACTGGGAAGCCTTAGATGAAAAAAGGGCTGAAATACATAATGAACTTAGAGATCTTGTGGAGGAGAGGAAGAAATTAGAGATCTTGCAAGGGACAGAGGAGGAAAGGTTGAGAAATGAGAAAAATGAGATGCTAATTTATATGCAGAGGGAGTTGGAGAATGTCAAACAAGAAAAGGAATTATTTGCCTCAACTACGAGGCATGAGCAGCAAGCCTTGTCTGAACAAGCTCAAAATAAGCATAATCAACTACTTCAAGATATAGAATTTCAAAGAAAAGATCTTGAAAGTCGCTTGCAGAATAGCCAGATGGAACTAGCGAAAATACGGCAGGAAAGGGAGGTATCATTTGAAGAGGAGAGAGAGAGAGAGCGGAATGAATTGTTTTGCTTGAGAGAGATTGCTCAGAAAGAAACAGAAGAGTTATTGTCTGAGAGGCATCGATTGGAAAAGGAAAAGGAGGTGGTTTCCCTGAATAGGAAGCAATTGATAGCAGACCATCTTGAAATTCGTCAAGATATTGATAAGCTCAACATATTAAGTAAGGAGCTTAAAATTCAGAGAGAACAACTTATCCAGGATAGGGTTCGCTTTTTGACCTTTGTTGATAAGCATAAGAGTTGTGGGAAGTGTGGTGTGTCCATTGAGGAATTTATAGTTCCTGACCTCCAAATACCTGAAGAAATTAGAGAATCACACCCTCTAGCAAAGTTAGATGCCGATTCTCTACAAAATCTCCAAAGAGAATTTACTGCTTCAGAGTTTGGTTCTTCAGATTCTGGAGGTCGCATGTCTTGGCTCAGAAGATGCAGCAGAAAGATTTTGAATCTATCTCCTATTAAGAAAATTGGACATGTAATTCCTCCTGTTTCTGGGAAGTTGGCTGCAGATTGTACTGTTTTAGAAGCCAAGGAGCCTAATGTCAATGTTGGCAATGTGAAAAGGTCTGGTATGGCTTATGAACCGCAAGAATCTTGTTTTAATGAGAATGAATCATCTGATGTTGAAAGACTTTCATTCAGTGATAACATCAGAGGGGCGGAGGATAGGCATGCAAACACGTTCGATGATTTTAGCAATTTAGACGGCAAGTTTGAAGAAGCTTCAGAAGCTTCAAAACAACGAGACATGAAGAGGGAGAGGCAAAAACATGAGAAAGGACTTAAGTCTGGTCATAGAACACGTTCAGTGAAGGCAACTGTTCAAGATGCAAAAAAATTTCTTGGGGAGACTGCGGGACAGTCAGATCTTAATGTACCTGTACAAAGTGATTTGAATTCTTTAAATAAAGGAATTAGCAATGTTCGGAAGAGATCATTGCCAGAATCTTCCACAGTTTCTATTAGTGACCAAGATGGAGATGATAGCGAAGGATGCTCTGACAGCATCACAACAGGCAGGCAACGTAAAAGGCGGCAAAAAATTGCTTCTGTGCAGGCGCAAGGAGAAAGTCGATATAATCTGAGGCGACACAAGATTGCTGGCAAAGCTAATGCAACTCAGGTTTCAGAAAATCTGACGACAGTGATTGAGAAAGAAAACGAAGAAACCCCTAGTGTTGATGGTGAAAACGGGAAAAAAGTGGACTCTGTGCACATTACAACAGTTGGAACTATCTATCGTTCCGAGGATAGAGTAGTTCAGTTTGAATTGCAAAGAACGGCTGAAGATAAAACTTCCTCGGAGAAGTTGGTTACAGTTAATGATTTACGCGATGAAGCGAATGGTTCAGCCGAATATGAAGATGAAGATCAAAGCATACTCGATGATGAAGACGAGTATGATGAAGAGCAGCCTGATGTGGGATCAATTGGAAAGAAGATTTGGACCTTTTTCACAACTTAG 3144 40.24 LFDYQHNLGLLLIEKKDWASKYDQLGQDLAETEEIFKREQSAHLIALSEVETRRDNLKKALAAEKQHVSSLKKALCEVNEERAEIKLTSQKKLADANALMHGIEEKSLELQKKLNAAEAKLAEVNRKSSELEMRMHEVEARESVLQTEQISLVTGKEAHQATSHKERESLRKLQQKLQEWEERLSKNRELLNDKEQKVNENSTTMKQKEKDLEEMKKKIDLSSSVLKRKEDNVNRRLADVEAKEKMEIEQLLDEQRVILQKKKEEFELQLEEKRQSLDNEGSTRIGAIKRKDLETNHEKEKLVKQEQALEKKMLRAKEKEGELEQKIKTLKSKDKILKADERKLEVERLQMLADRESLQSLINEIEEMRTENSQKERQFHEEREKLQVMKEERSEHIRLQCQLMQEIESYRLQNKIVTKEHEDLKQERVKFERDWEALDEKRAEIHNELRDLVEERKKLEILQGTEEERLRNEKNEMLIYMQRELENVKQEKELFASTTRHEQQALSEQAQNKHNQLLQDIEFQRKDLESRLQNSQMELAKIRQEREVSFEEERERERNELFCLREIAQKETEELLSERHRLEKEKEVVSLNRKQLIADHLEIRQDIDKLNILSKELKIQREQLIQDRVRFLTFVDKHKSCGKCGVSIEEFIVPDLQIPEEIRESHPLAKLDADSLQNLQREFTASEFGSSDSGGRMSWLRRCSRKILNLSPIKKIGHVIPPVSGKLAADCTVLEAKEPNVNVGNVKRSGMAYEPQESCFNENESSDVERLSFSDNIRGAEDRHANTFDDFSNLDGKFEEASEASKQRDMKRERQKHEKGLKSGHRTRSVKATVQDAKKFLGETAGQSDLNVPVQSDLNSLNKGISNVRKRSLPESSTVSISDQDGDDSEGCSDSITTGRQRKRRQKIASVQAQGESRYNLRRHKIAGKANATQVSENLTTVIEKENEETPSVDGENGKKVDSVHITTVGTIYRSEDRVVQFELQRTAEDKTSSEKLVTVNDLRDEANGSAEYEDEDQSILDDEDEYDEEQPDVGSIGKKIWTFFTT 1047
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5940639 5955610 + ClG42_01g0058100.10 Clacu01g0581 239965

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g0581 1047 MobiDBLite consensus disorder prediction 869 896 - -
Clacu01g0581 1047 Coils Coil 100 141 - -
Clacu01g0581 1047 Coils Coil 245 276 - -
Clacu01g0581 1047 Coils Coil 565 585 - -
Clacu01g0581 1047 MobiDBLite consensus disorder prediction 1009 1031 - -
Clacu01g0581 1047 MobiDBLite consensus disorder prediction 869 925 - -
Clacu01g0581 1047 Coils Coil 299 333 - -
Clacu01g0581 1047 Coils Coil 500 545 - -
Clacu01g0581 1047 Coils Coil 351 392 - -
Clacu01g0581 1047 MobiDBLite consensus disorder prediction 799 831 - -
Clacu01g0581 1047 Coils Coil 47 91 - -
Clacu01g0581 1047 Coils Coil 407 462 - -
Clacu01g0581 1047 Coils Coil 607 627 - -
Clacu01g0581 1047 PANTHER PROTEIN CROWDED NUCLEI 4 240 1047 IPR040418 GO:0005634(InterPro)|GO:0006997(InterPro)
Clacu01g0581 1047 Coils Coil 471 491 - -
Clacu01g0581 1047 MobiDBLite consensus disorder prediction 1004 1033 - -
Clacu01g0581 1047 Coils Coil 163 232 - -
Clacu01g0581 1047 MobiDBLite consensus disorder prediction 799 817 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g0581 K27866 - - csv:101222820 1669.83
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0581 Clacu-Chr1:5940639 Clacu11g0677 Clacu-Chr11:6547225 2.70E-68 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g246 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0864 Cone19ag0864 . . . Csa05g02073 . . . Blo11g00826 Bda07g01523 . Bpe11g01685 . . . . Cmo04g02051 . . . Car04g01940 . . . Bhi12g00824 . . . . . Lcy10g0868 Cla01g00563 Cam01g0586 Cec01g0578 Cco01g0602 Clacu01g0581 Cmu01g0552 Cre09g1955 Lsi09g00612 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004989 1 2 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 3 4 1 1 1 1 1 39