Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g0590 ATGAGTGGCGGTGGCAGTGGCACTCCTCGAAGCACTAGGGATTTGATCTGCAACGCCGGTGCCGGTGCTGCCGCAGGTTCTATAGCAGCCACGTTCGTTTGCCCCTTAGATGTCATCAAGACGAGGCTGCAAGTGCATGGTCTTCCATCTGGTCAACGAGGAGGTAGTATTATTATCACTAGCCTACAAGACATAATGCGTTCTGAAGGTTTCAGGGGAATGTACCGTGGCCTTTCACCAACAATAGTAGCGCTTCTTCCAAACTGGGCTGTCTACTTCACAGTTTATGAGCATCTAAAAGGCCTACTTCATTCAGATGGGGACGATGGTCATCAACTCTCATTTGGGGAACATATGGTTGCTGCTGCTGGAGCTGGGGCATCTACTGCCATTGCAACAAATCCTTTGTGGGTTGTTAAGACAAGACTCCAAACACAGGGAATGAGGCCTGGTGTGGTTCCTTACACAGGCATGGTTTCAGCATTTACCAGGATTGTACAGGAAGAAGGAATTCGTGGGCTTTACAGTGGTATCATCCCTTCATTAGTTGGGATAAGTCATGTTGCAATTCAATTTCCTGCATACGAAAAGCTCAAATCCTATATGGCAGAAAGAGATAACACGACCATTGACAAGCTAAGTCCAGGACATTTAGCTATTGCCTCCTCGTTGTCGAAAATTACAGCCTCTGTAATGACTTACCCACATGAGGTAGTTCGTTCCCGGCTACAAGAGCAAGGCCAAGCCAGAAACGTTGCTCCTCAATACTCAGGAGTAATGGACTGTATCAAAAAGGTTTTTCGAAAGGAAGGTCTCCCCGGTTTTTATAGAGGTTGTGCGACGAATCTGTTGCGAACAACTCCATCCGCTGTAATAACTTTCACCAGCTATGAAATGATACATAGGTTCCTACTGCGAGTTATACCTTCAAGTGAGGAGAAATATTCCGAAACTCAACCGAATTCCGATAGCAGTAGCCATGTGAAGCCCCAAATGGGGATCAGAGACGACTCAAAGGAAGATAGTGATTCCAGCATACAACAATCACAATCCCAACCAAGTAAGCAAACTAGAATTCCTCTGGGGAATAAAGAACACTTAACATCTAGACATTGA 1116 45.79 MSGGGSGTPRSTRDLICNAGAGAAAGSIAATFVCPLDVIKTRLQVHGLPSGQRGGSIIITSLQDIMRSEGFRGMYRGLSPTIVALLPNWAVYFTVYEHLKGLLHSDGDDGHQLSFGEHMVAAAGAGASTAIATNPLWVVKTRLQTQGMRPGVVPYTGMVSAFTRIVQEEGIRGLYSGIIPSLVGISHVAIQFPAYEKLKSYMAERDNTTIDKLSPGHLAIASSLSKITASVMTYPHEVVRSRLQEQGQARNVAPQYSGVMDCIKKVFRKEGLPGFYRGCATNLLRTTPSAVITFTSYEMIHRFLLRVIPSSEEKYSETQPNSDSSSHVKPQMGIRDDSKEDSDSSIQQSQSQPSKQTRIPLGNKEHLTSRH 371
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6093910 6097787 + ClG42_01g0059000.10 Clacu01g0590 239974
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g0590 371 PANTHER MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED 11 319 IPR044712 GO:0006862(InterPro)|GO:0022857(PANTHER)|GO:0035352(PANTHER)|GO:0051724(PANTHER)|GO:0055085(PANTHER)|GO:0055085(InterPro)
Clacu01g0590 371 SUPERFAMILY Mitochondrial carrier 14 299 IPR023395 -
Clacu01g0590 371 ProSiteProfiles Solute carrier (Solcar) repeat profile. 13 102 IPR018108 -
Clacu01g0590 371 ProSiteProfiles Solute carrier (Solcar) repeat profile. 113 201 IPR018108 -
Clacu01g0590 371 ProSiteProfiles Solute carrier (Solcar) repeat profile. 213 303 IPR018108 -
Clacu01g0590 371 Pfam Mitochondrial carrier protein 212 305 IPR018108 -
Clacu01g0590 371 Pfam Mitochondrial carrier protein 16 105 IPR018108 -
Clacu01g0590 371 Pfam Mitochondrial carrier protein 112 204 IPR018108 -
Clacu01g0590 371 Gene3D Mitochondrial carrier domain 4 108 IPR023395 -
Clacu01g0590 371 Gene3D Mitochondrial carrier domain 109 315 IPR023395 -
Clacu01g0590 371 MobiDBLite consensus disorder prediction 344 363 - -
Clacu01g0590 371 MobiDBLite consensus disorder prediction 314 371 - -
Clacu01g0590 371 FunFam Nicotinamide adenine dinucleotide transporter 2, mitochondrial 14 304 - -
Clacu01g0590 371 MobiDBLite consensus disorder prediction 314 329 - -
Clacu01g0590 371 PRINTS Mitochondrial carrier protein signature 128 146 IPR002067 GO:0055085(InterPro)
Clacu01g0590 371 PRINTS Mitochondrial carrier protein signature 31 45 IPR002067 GO:0055085(InterPro)
Clacu01g0590 371 PRINTS Mitochondrial carrier protein signature 77 97 IPR002067 GO:0055085(InterPro)
Clacu01g0590 371 PRINTS Mitochondrial carrier protein signature 222 244 IPR002067 GO:0055085(InterPro)
Clacu01g0590 371 PRINTS Mitochondrial carrier protein signature 18 31 IPR002067 GO:0055085(InterPro)
Clacu01g0590 371 PRINTS Mitochondrial carrier protein signature 175 193 IPR002067 GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0590 Clacu-Chr1:6093910 Clacu09g0549 Clacu-Chr9:4685985 1.70E-118 dispersed
Clacu01g0590 Clacu-Chr1:6093910 Clacu04g0824 Clacu-Chr4:22619829 4.90E-25 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g0590 K15115 - csv:101216902 641.728