Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g0596 ATGCTTCTTGTGGGTCTGTTTCTCATTCTTTTGTGTTGTTCTGATTGTCTTCTTCTTGTGAGTTCTTTGAATGATGAAGGGTTTGTGCTTTTGTCACTTAAGCAGTCCATTACTGTAGACCCAGATGGGGCTTTCAGCAATTGGGATTCTTCTGATGAAACCCCTTGTTCTTGGAATGGAATTGGTTGTGTAAAGGAAATTGTTGTTTCTGTTACCATTCCTAAGAGAAATTTGTATGGATTTCTTCCTTCTGCTCTTGGGGCTCTCTCTGGGCTTCGCCATTTGAATTTGAGGAACAATAGGCTTTATGGGACCTTGCCTTTTCAGCTTTTCTCAGCTCAAGCCCTTCAGAGCTTGGTTCTTTATGGGAATTCCTTTTCTGGGTCTGTTCCAAATGGGATTGGGAAGCTTATATACCTTCAAACTTTGGATTTGTCTCAAAATTTCTTCAATGGGTCATTACCCACTTCAATTATACAATGTAAGAGACTTAAAACCCTTGATGTTAGTCAGAATAACTTCACTGGTTCACTGCCACATGGGTTTGGAACTAGTTTTAGTTCTTTGGAGAAACTGGATCTTTCATTTAACTCCTTTGATGGTTCCCTTCCTAGTGATTTGGGGAATTTGTCTAGCTTACAGGGCACTGTTGACTTGTCTCATAATCTTTTTTCTGGTTCAATTCCAGCTAGCCTTGGAAACCTACCTGAAAAGGTTTACATTGATCTTAGCCATAACAATTTGAGTGGTCCAATACCCCAAAATGGTGCTCTGATGAACAGAGGACCCACTGCTTTTATTGGTAACCCTGGGCTCTGTGGTTCCCCATTGAAGAACACATGTTCTTCAGGAACTCTGAGTGCAAGCTCACCGTCATTGCTTCCGTTTCTCCCGGATGATCATTCGCGGGGGATTTCTGGTGACAATGCTGAGAAAACCAGGGGATTAAGTAAGAGTGCTGTTATTGCAATAGTACTTGGTGATGTGATTGGCATATGTTTAGTTGGGTTATTGTTCTCATATTGTTATTCTAGAGCTTGTAGTCCAAGGAGCAAAGACGAGATCGGGCATGGTTCCGATAAGGGGAAAGGAAGAAATGAGTGTTTATGCTTCAGGAAGGATGAATCTGAGTCGGTTTCACAGAATGTGGAGCAGTATGATCTTGTGCCGTTGGATGCACAAGTCGCATTTGATCTTGATGAACTTCTCAAGGCATCAGCCTTTGTTATTGGCAAAAGTGGGATTGGTATAGTGTACAAAGTGGTGCTTGAAGATGGAGTTACGTTGGCCGTGCGACGATTGGGGGAAGGCGGTTCGCAAAGATTCAAAGAATTTCAAACAGAAGTAGAAGCAATAGCAAAGCTAAGGCATCCTAATCTTGTCACTCTTAGAGCCTATTACTGGTCTGTTGATGAGAAGCTGCTCATTTATGATTTCATACCCAATGGAAACCTTGCCATTGCCATTCATGGAAAGCCAGGAATGGTATCTTTCACACCGTTATCCTGGTCTGCAAGGTTAAAGATCATGGAAGGAATTGCTAAAGGAATTGTTTATCTCCATGAATTCAGCCCCAAGAAGTATGTCCATGGAGATTTGAAACCCAACAACATTCTGCTCAGTCAGAACATGGAAGCCAAAATTTCTGACTTTGGCCTTGCTCGACTTGCGAATATTGCAGGAGGAACCCCAACCTTACAATCAAGTCGAGTGGCGTCTGAGAAACCGTTAGATCCAAAACAACCAAAAACCACAACATCCGAGATCATTTGCAGTTCATCTTCCAATACAGGAACTTGTTATCAAGCCCCTGAATCACTCAAAGTCTTAAAACCATCCCAAAAATGGGATGTTTACTCTTATGGTGTGATCTTACTTGAAATGATCACTGGAAGATTCCCAGTAATCCAAGTGAGTTCTTCCTCTGAAATGGATCTTGTCCATTGGATTCAACTCTGCATTGAAGAACAAAAGCCTCTTTCAGAAGTCATAGATCCATATCTAGTTCAAGATGCAGATAAAGAAGAAGAGTTCATCTCTGTACTCAAAATTGCTATGTCTTGTGTTCATGGAAGCCCTGAAAGGAGACCTACCATGAGGCACATCTCCGACGCCCTCGAAAGGCTATCGATTTCACCAACGTCGAAGAATTAA 2154 41.92 MLLVGLFLILLCCSDCLLLVSSLNDEGFVLLSLKQSITVDPDGAFSNWDSSDETPCSWNGIGCVKEIVVSVTIPKRNLYGFLPSALGALSGLRHLNLRNNRLYGTLPFQLFSAQALQSLVLYGNSFSGSVPNGIGKLIYLQTLDLSQNFFNGSLPTSIIQCKRLKTLDVSQNNFTGSLPHGFGTSFSSLEKLDLSFNSFDGSLPSDLGNLSSLQGTVDLSHNLFSGSIPASLGNLPEKVYIDLSHNNLSGPIPQNGALMNRGPTAFIGNPGLCGSPLKNTCSSGTLSASSPSLLPFLPDDHSRGISGDNAEKTRGLSKSAVIAIVLGDVIGICLVGLLFSYCYSRACSPRSKDEIGHGSDKGKGRNECLCFRKDESESVSQNVEQYDLVPLDAQVAFDLDELLKASAFVIGKSGIGIVYKVVLEDGVTLAVRRLGEGGSQRFKEFQTEVEAIAKLRHPNLVTLRAYYWSVDEKLLIYDFIPNGNLAIAIHGKPGMVSFTPLSWSARLKIMEGIAKGIVYLHEFSPKKYVHGDLKPNNILLSQNMEAKISDFGLARLANIAGGTPTLQSSRVASEKPLDPKQPKTTTSEIICSSSSNTGTCYQAPESLKVLKPSQKWDVYSYGVILLEMITGRFPVIQVSSSSEMDLVHWIQLCIEEQKPLSEVIDPYLVQDADKEEEFISVLKIAMSCVHGSPERRPTMRHISDALERLSISPTSKN 717
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6164938 6167214 + ClG42_01g0059600.10 Clacu01g0596 239980
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g0596 717 Pfam Leucine Rich Repeat 116 137 IPR001611 GO:0005515(InterPro)
Clacu01g0596 717 Pfam Leucine Rich Repeat 140 160 IPR001611 GO:0005515(InterPro)
Clacu01g0596 717 Pfam Leucine Rich Repeat 92 110 IPR001611 GO:0005515(InterPro)
Clacu01g0596 717 Pfam Leucine Rich Repeat 188 210 IPR001611 GO:0005515(InterPro)
Clacu01g0596 717 Pfam Leucine Rich Repeat 163 183 IPR001611 GO:0005515(InterPro)
Clacu01g0596 717 Pfam Leucine Rich Repeat 217 235 IPR001611 GO:0005515(InterPro)
Clacu01g0596 717 PANTHER OS05G0588300 PROTEIN 160 710 IPR050994 -
Clacu01g0596 717 FunFam Leucine-rich repeat receptor-like protein kinase 387 479 - -
Clacu01g0596 717 Pfam Protein kinase domain 410 703 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu01g0596 717 Pfam Leucine rich repeat N-terminal domain 23 63 IPR013210 -
Clacu01g0596 717 ProSitePatterns Serine/Threonine protein kinases active-site signature. 528 540 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Clacu01g0596 717 MobiDBLite consensus disorder prediction 566 589 - -
Clacu01g0596 717 Gene3D Phosphorylase Kinase; domain 1 372 479 - -
Clacu01g0596 717 Gene3D Ribonuclease Inhibitor 23 184 IPR032675 -
Clacu01g0596 717 CDD STKc_IRAK 410 709 - -
Clacu01g0596 717 SUPERFAMILY L domain-like 24 278 - -
Clacu01g0596 717 ProSiteProfiles Protein kinase domain profile. 404 709 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu01g0596 717 Gene3D Transferase(Phosphotransferase) domain 1 480 716 - -
Clacu01g0596 717 FunFam Leucine-rich repeat receptor-like protein kinase 188 283 - -
Clacu01g0596 717 SUPERFAMILY Protein kinase-like (PK-like) 409 707 IPR011009 -
Clacu01g0596 717 SMART serkin_6 408 709 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Clacu01g0596 717 FunFam Os07g0541700 protein 489 573 - -
Clacu01g0596 717 FunFam Leucine-rich repeat receptor-like protein kinase 23 180 - -
Clacu01g0596 717 Gene3D Ribonuclease Inhibitor 186 279 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0596 Clacu-Chr1:6164938 Clacu11g1088 Clacu-Chr11:13651283 1.00E-127 dispersed
Clacu01g0596 Clacu-Chr1:6164938 Clacu05g2516 Clacu-Chr5:33270190 2.30E-42 wgd
Clacu01g0596 Clacu-Chr1:6164938 Clacu05g2440 Clacu-Chr5:32604044 2.70E-213 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
73230 PF00069 Pkinase 4.60E-34 CL0016 Clacu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g0596 - - - 0.0