Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g0599 ATGGTCGGAGGGCAAACCAGTGGGGGCGGGGGGGCTGCCCTCTCCTTCCTTCCCTTTCTCTGTCCTTTTACAGTCATGGCGATCATCAAAAAAACTCGGAGCTTGTTCAACTTTATCCATCCAAAAATTGGCAAATTCCGTATTCTGTATTCCTCCACCCATAAACCTAGTGCCCCTCTGTGTCATTTTGCCTCAGATTCGTGTACCCACAAAGCATCCGCCATTGAAACTCATCCCCACAAACCCCATTTTGTCATTGCCCTCTACGTGTTTGTTGAATGTCCCCTTCGAAGTTTTTGCTCCTCTCACAAATTTACCACCACTCAACTAGCATCTACTGCTCTATCAATGATTCAGGAAAAAGGTGACCGGTTCGACCTTGTCATGGCTAACGTTAGCATGCCTGATATGGACAGTTTTTCGTTTTTGCACGTGCTCCTTAAGATGAATATTGCTGTCATTTTTATGTCCTCGGGGATGAACTTGAGTGTGGCTACGAAAGCATTGGCAGAAGGAGCATGCTATTTTCTTCAGAAACCTATTTCCAAGGATGATCTCAAATATGTGTGGCAACACGTGTATCGATGGAACAGAAACATAACCAAACAAACCCAAAAAGCAAAATGTATGGAAAAAGCCAAACCTAGAAAGGAATCTGTAGGTATCCAAATTGCGGACGCTGTTGTTTTGTCTCGGTCTGGCGCTGCAGTTAGTTATAATAATAATTGTTGCATTAATTATAAACCTATGAACTATAAAGAAACAGAGAAGAGTAAGCAAATCGTATCACATGATAGCCTGGCTGGGTCTTACTTTGGAGGAAAGAGATTAACTGATGACATAGAAGGAATAAACAGGGAAAAGAGAGTTAAATATTATTCCGAACCTACCAAGTTTGGATTTTCAAGAATTGATGAGGATCGTGAAAGAAGGAAGGAATATTATATTGCCAGTGATAGCAGATCACGTGTCGTCTGGAATGCAGAACGACGTCGGAAGTTCACAGATGCCCTTAACAAGCTAGCTCGTCCAAAACTTATACTGAAGATGATGAATGAACCATGTTTGACCCTGCGCCAGGTTGCGAACCACCTGCAGAAATACAAAGCTCAAGTAGAATGCATCAAAAGGAGGAGAGAAAATAAATTACCTAATAGGAGGGAAGCATCCAAATGCGATTTCTCAGTCAGGACTCAACTTCCCCCGCTGCTGCAGCAGCACCATGAGACAAGCAGATTTTCAAATGTAGGTCTGACCTCTGGTTTGGGGGGTGAAAGATTCCAACTTATAGCGCCTAAAAGTCAGCATAGTCCTAGATTGCCTGTTAGCGACTTTGTAAATTGCGATCTGAAAATGCTTCACCACAATTTTCAGCATGTCAGCTCAAACTACGATTCAGTTTCATATGACATCAATAAGGAAGTTGGAATATGCCCTGATAATATTCAAACATTTCAAAAGGTAGGGAGTGCTTTTCCCACTGACAATTGTGGGAAGTTTGCTCTCATAGGAGGGGGTGTTCAAACATCTGAGTTAAACTTCTCAAATGTATCTAAAATGACTTCAGAGGTAGCTTCTTCTGTATTTGATGAAACTCAATTCCCAAACAATCTTCTTGATGGTGTAATTCATCAGCTAGATTTGACTGCTTTCAAAATTGAAAACCAAGAAGCATTGGAATGTAGTGGTACATCTGAAGAGACCCAGTCAATGTCAAGGGACATAGCTATACTCGATTCAATCAACTTGGACAATGTTGTTGAGGTGGGACAGGAACTTCCTGCAGCTTCTGAAAGTCAAGGAAGCCAACAATTAGCAGAATATGCATATCTATTAGATGTATTAGAAGATGATCCGTACGACTTTGTTGGTGACTTGAATCTGAGTGATGTTGATAAATACAGTGAATGGCTGAGGAACACTGTACTCGAAAACAGAAACGGTCCAGACAGTTTTATCACTGACAATGCAGAGAACTTTCCAGTTGAAGACACTCGATAA 2001 41.53 MVGGQTSGGGGAALSFLPFLCPFTVMAIIKKTRSLFNFIHPKIGKFRILYSSTHKPSAPLCHFASDSCTHKASAIETHPHKPHFVIALYVFVECPLRSFCSSHKFTTTQLASTALSMIQEKGDRFDLVMANVSMPDMDSFSFLHVLLKMNIAVIFMSSGMNLSVATKALAEGACYFLQKPISKDDLKYVWQHVYRWNRNITKQTQKAKCMEKAKPRKESVGIQIADAVVLSRSGAAVSYNNNCCINYKPMNYKETEKSKQIVSHDSLAGSYFGGKRLTDDIEGINREKRVKYYSEPTKFGFSRIDEDRERRKEYYIASDSRSRVVWNAERRRKFTDALNKLARPKLILKMMNEPCLTLRQVANHLQKYKAQVECIKRRRENKLPNRREASKCDFSVRTQLPPLLQQHHETSRFSNVGLTSGLGGERFQLIAPKSQHSPRLPVSDFVNCDLKMLHHNFQHVSSNYDSVSYDINKEVGICPDNIQTFQKVGSAFPTDNCGKFALIGGGVQTSELNFSNVSKMTSEVASSVFDETQFPNNLLDGVIHQLDLTAFKIENQEALECSGTSEETQSMSRDIAILDSINLDNVVEVGQELPAASESQGSQQLAEYAYLLDVLEDDPYDFVGDLNLSDVDKYSEWLRNTVLENRNGPDSFITDNAENFPVEDTR 666
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6193004 6197254 - ClG42_01g0059900.10 Clacu01g0599 239983

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g0599 666 SUPERFAMILY Homeodomain-like 320 371 IPR009057 -
Clacu01g0599 666 SUPERFAMILY CheY-like 111 203 IPR011006 -
Clacu01g0599 666 Gene3D - 321 373 - -
Clacu01g0599 666 Gene3D - 96 214 - -
Clacu01g0599 666 Coils Coil 358 378 - -
Clacu01g0599 666 PANTHER TWO-COMPONENT RESPONSE REGULATOR 100 425 IPR045279 GO:0009736(InterPro)
Clacu01g0599 666 ProSiteProfiles Response regulatory domain profile. 71 194 IPR001789 GO:0000160(InterPro)
Clacu01g0599 666 Pfam Response regulator receiver domain 107 187 IPR001789 GO:0000160(InterPro)
Clacu01g0599 666 NCBIfam myb-like DNA-binding domain, SHAQKYF class 322 370 IPR006447 GO:0003677(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g0599 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0599 Clacu-Chr1:6193004 Clacu06g1305 Clacu-Chr6:23960247 1.50E-19 dispersed
Clacu01g0599 Clacu-Chr1:6193004 Clacu05g2433 Clacu-Chr5:32546635 1.20E-37 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g367 . . . . . . . . . . . Cma04g00061 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma04g02080 . . . . . . . . . . . . Cla01g00580 Cam01g0607 Cec01g0597 Cco01g0621 Clacu01g0599 Cmu01g0572 Cre09g1935 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002835 0 8 0 0 0 1 3 1 1 1 1 1 2 1 1 5 1 0 0 1 1 7 3 1 1 1 2 8 2 0 54
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46971 PF00072 Response_reg 2.40E-09 CL0304 Clacu TR