Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g0600 ATGGAAAGCAATCGACAACTGTCTGTGGATCTTGAAATGCACAAAAGCACCACTTCTGCGTCGAATACCATTGCTGCTGCGACCACTATGTCATCGTCGTCGCAGCTCAAGTCGCAGCTTCAAACAAACGATGTTTATGCTTCCCTCTATAATTCACCAATCTTTGCTCCAAAGCAATCCGTGCCGGTATCTCTTCCATTGACTCTCTATGGTGACTCGACTCACGCGGATTCAACCTCCTCTTCAAAAACGATAAGCAGCCACCTCTATCAAACCCGCGTCGTACAAGATCACCAGGAAATGGTCAATCGTCATAGCCTCTGTCTCACTCATCTTCGAGAAGCAACCGAAGAAGCCGATGCTCTTCGGCAAGAGAATATCCACCTCAGAAGTATTAATCACGAGCTTAGCAAACACCTCAGCCTCCTGATCCACGCTTCGGTTCAGAAACAGTACGGCTCCTCTGATCAAGCTCCTCCGTTTAATTTTGTGGAAGGATTCCGCGGACTCAGTGTATCAGAGAAGGGAGCAAGCAGTTCGGCATGGGAGGATATTTCCGATGAGAGTCCGACGAGCGTAATGGAGGGCGGAAGGGTAGAGGGCGTTGAGGTGGAGAGATTTTCGCTCCCAAAGAGCATCTCCGTGAGGTCCAATGGATACCTGAAGATGGCACAAGCCGGCACCAGCCAGGGCGGAAAGGTCCGCGCCTCATCTCGGCCCAGAACTGCAAGTCCCGTCAAAGTTACGCAGAAGGTGTACGTGCAAGGAGTGAAAGAAGAGGAAAAGCCACTGGAATTAGAGGTGTACAACCAGGGCATGTTCAAAACCGAGCTCTGCAACAAATGGCAAGAAACGGGCAGCTGCCCCTATGGAGACCACTGCCAATTCGCCCATGGAATAGAGGAGCTCCGCCCTGTGATCCGCCACCCCCGCTACAAGACGGAGGTCTGCCGGATGGTCCTCGCCGGAGTCGTCTGCCCTTACGGTCACCGCTGCCACTTTCGTCATGCACTCACTGACCAGGAAAGGCTCATGGGAACACTCAAGCCCACCTGCAGGACCACCACCCCCAAGCTCGACAGGTGA 1086 52.95 MESNRQLSVDLEMHKSTTSASNTIAAATTMSSSSQLKSQLQTNDVYASLYNSPIFAPKQSVPVSLPLTLYGDSTHADSTSSSKTISSHLYQTRVVQDHQEMVNRHSLCLTHLREATEEADALRQENIHLRSINHELSKHLSLLIHASVQKQYGSSDQAPPFNFVEGFRGLSVSEKGASSSAWEDISDESPTSVMEGGRVEGVEVERFSLPKSISVRSNGYLKMAQAGTSQGGKVRASSRPRTASPVKVTQKVYVQGVKEEEKPLELEVYNQGMFKTELCNKWQETGSCPYGDHCQFAHGIEELRPVIRHPRYKTEVCRMVLAGVVCPYGHRCHFRHALTDQERLMGTLKPTCRTTTPKLDR 361
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6207776 6210806 + ClG42_01g0060000.10 Clacu01g0600 239984
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g0600 361 PANTHER CCCH ZINC FINGER/TIS11-RELATED 70 339 IPR045877 GO:0003729(InterPro)
Clacu01g0600 361 SUPERFAMILY CCCH zinc finger 270 305 IPR036855 GO:0046872(InterPro)
Clacu01g0600 361 SUPERFAMILY CCCH zinc finger 307 341 IPR036855 GO:0046872(InterPro)
Clacu01g0600 361 Gene3D - 307 343 - -
Clacu01g0600 361 Gene3D - 267 306 - -
Clacu01g0600 361 FunFam Zinc finger protein 36, C3H1 type-like 1 307 343 - -
Clacu01g0600 361 ProSiteProfiles Zinc finger C3H1-type profile. 311 339 IPR000571 GO:0046872(InterPro)
Clacu01g0600 361 SMART c3hfinal6 273 300 IPR000571 GO:0046872(InterPro)
Clacu01g0600 361 SMART c3hfinal6 311 338 IPR000571 GO:0046872(InterPro)
Clacu01g0600 361 FunFam zinc finger CCCH domain-containing protein 15-like 267 306 - -
Clacu01g0600 361 ProSiteProfiles Zinc finger C3H1-type profile. 273 301 IPR000571 GO:0046872(InterPro)
Clacu01g0600 361 Coils Coil 112 132 - -
Clacu01g0600 361 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 274 299 IPR000571 GO:0046872(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0600 Clacu-Chr1:6207776 Clacu11g1097 Clacu-Chr11:13798170 6.00E-36 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46972 PF00642 zf-CCCH 5.60E-12 CL0537 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g0600 K18753 - csv:101203274 623.239