Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g0607 ATGGCTTCACGCAGACTTTTATCTTCTCTTCTCCGATCGTCGGCACGGCGGTTATCTTCCAGATCCCCGATCTCATCCCCCAACCCCAGGATTCCATTGTCTCACACTTCTCGCGCTTCCCCTTATGGTTACCTCCTCAACCGTGTGGCTCAGTACGCCACCTCCGCCGCCGCGGCTTCACCACCGTCCCCACCGTCATCCGCTAAGCCGGACGCGGGAAAGAGCGGTAAGATCACCGACGAGTTCACTGGAGCCGGCGCGATCGGCCAGGTTTGTCAGGTGATTGGAGCCGTCGTCGATGTCAGATTCGATGAAGGGTTACCTCCAATTCTTACGGCGCTCGAGGTACTTGATCACTCGATCCGTTTGGTGCTGGAGGTGGCGCAGCATTTGGGAGAGAATATGGTCAGGACTATTGCTATGGATGGGACGGAAGGGCTCGTTCGAGGGCAGAAAGTGCTCAACACTGGTTCTCCCATCACTGTTCCAGTTGGTAGAGCTACTCTTGGACGTATTATAAATGTCATTGGAGAGCCTATTGATGAGAAAGGCGACCTTAAGACCGACCATTATTTGCCTATTCACAGAGAAGCCCCCGCCTTTGTTGAGCAAGCAACTGAGCAGCAAATTCTCGTAACTGGTATTAAGGTTGTTGACCTTCTTGCTCCATATCAAAGAGGAGGAAAGATTGGGCTTTTTGGTGGTGCGGGTGTGGGAAAAACTGTGCTTATCATGGAACTTATCAACAATGTGGCGAAAGCTCATGGTGGTTTCTCAGTGTTTGCTGGTGTCGGAGAACGCACTCGAGAGGGTAATGATTTGTACAGAGAAATGATTGAGAGTGGTGCTGATAGCAAATGTGCTCTTGTGTATGGTCAAATGAATGAGCCCCCTGGTGCACGTGCTCGTGTTGGTCTTACTGGACTAACTGTGGCCGAACACTTCCGTGATGCTGAAGGACAGGATGTGCTTCTCTTCATTGATAACATTTTCCGCTTTACCCAGGCTAACTCAGAGGTGTCTGCACTGCTTGGACGTATTCCATCTGCTGTTGGTTACCAACCAACCTTGGCTACTGATCTGGGAGGCCTTCAAGAACGTATTACCACCACTAAGAAAGGATCTATTACCTCTGTACAAGCTATCTATGTGCCTGCTGATGATTTGACTGATCCTGCCCCTGCTACCACCTTTGCTCACTTGGATGCCACAACTGTGTTGTCGCGTCAGATTTCAGAGCTTGGTATTTATCCTGCTGTGGATCCTCTTGACTCTACATCTCGTATGCTCTCTCCTCATATTTTGGGAGAGGATCACTATAATACTGCTCGTGGAGTACAGAAGGTTCTTCAAAATTACAAGAATTTGCAAGATATTATTGCCATTCTGGGAATGGATGAGCTCAGTGAAGATGATAAGTTAACTGTTGCACGTGCTCGTAAAATCCAACGGTTCCTGAGCCAGCCTTTCCATGTTGCTGAAGTATTTACTGGGGCACCTGGCAAATATGTGGAGCTAAAAGAAAGTATCAACAGTTTCCAGGGAGTTTTGGACGGAAAGTACGACGACCTTCCCGAACAATCATTCTACATGGTTGGAGGCATTGAAGAGGTCATTGCCAAGGCCGAGAAGATTGCCAAGGAATCTGCTGCCTAA 1656 48.97 MASRRLLSSLLRSSARRLSSRSPISSPNPRIPLSHTSRASPYGYLLNRVAQYATSAAAASPPSPPSSAKPDAGKSGKITDEFTGAGAIGQVCQVIGAVVDVRFDEGLPPILTALEVLDHSIRLVLEVAQHLGENMVRTIAMDGTEGLVRGQKVLNTGSPITVPVGRATLGRIINVIGEPIDEKGDLKTDHYLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPHILGEDHYNTARGVQKVLQNYKNLQDIIAILGMDELSEDDKLTVARARKIQRFLSQPFHVAEVFTGAPGKYVELKESINSFQGVLDGKYDDLPEQSFYMVGGIEEVIAKAEKIAKESAA 551
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6330395 6334375 + ClG42_01g0060700.10 Clacu01g0607 239991

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g0607 551 FunFam ATP synthase subunit beta 160 429 - -
Clacu01g0607 551 ProSitePatterns ATP synthase alpha and beta subunits signature. 418 427 IPR020003 GO:0005524(InterPro)
Clacu01g0607 551 CDD F1-ATPase_beta_CD 161 432 - -
Clacu01g0607 551 SMART AAA_5 226 490 IPR003593 GO:0016887(InterPro)
Clacu01g0607 551 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 161 433 IPR027417 -
Clacu01g0607 551 Gene3D - 430 551 IPR024034 -
Clacu01g0607 551 SUPERFAMILY N-terminal domain of alpha and beta subunits of F1 ATP synthase 86 159 IPR036121 GO:0046034(InterPro)|GO:1902600(InterPro)
Clacu01g0607 551 PIRSF ATPase_subunit_beta 6 551 - -
Clacu01g0607 551 Pfam C-terminal domain of V and A type ATP synthase 434 512 - -
Clacu01g0607 551 Gene3D - 77 159 - -
Clacu01g0607 551 MobiDBLite consensus disorder prediction 14 38 - -
Clacu01g0607 551 FunFam ATP synthase subunit beta 77 159 - -
Clacu01g0607 551 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 214 427 IPR000194 GO:0005524(InterPro)
Clacu01g0607 551 Pfam ATP synthase alpha/beta family, beta-barrel domain 91 157 IPR004100 GO:0046034(InterPro)|GO:1902600(InterPro)
Clacu01g0607 551 SUPERFAMILY C-terminal domain of alpha and beta subunits of F1 ATP synthase 430 546 - -
Clacu01g0607 551 CDD ATP-synt_F1_beta_C 434 541 - -
Clacu01g0607 551 MobiDBLite consensus disorder prediction 56 78 - -
Clacu01g0607 551 Gene3D ATP synthase, F1 beta subunit 1 52 IPR042079 -
Clacu01g0607 551 MobiDBLite consensus disorder prediction 14 35 - -
Clacu01g0607 551 NCBIfam F0F1 ATP synthase subunit beta 88 545 IPR005722 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
Clacu01g0607 551 Gene3D - 160 429 IPR027417 -
Clacu01g0607 551 CDD ATP-synt_F1_beta_N 87 160 - -
Clacu01g0607 551 Pfam ATP synthase F1 beta subunit 1 48 IPR020971 GO:0005524(InterPro)|GO:0006754(InterPro)|GO:0016887(InterPro)|GO:0045261(InterPro)
Clacu01g0607 551 FunFam ATP synthase subunit beta 430 549 - -
Clacu01g0607 551 PANTHER ATP SYNTHASE 73 548 IPR050053 GO:0005753(PANTHER)|GO:0042776(PANTHER)|GO:0045261(PANTHER)|GO:0046933(PANTHER)
Clacu01g0607 551 Hamap ATP synthase subunit beta [atpB]. 86 545 IPR005722 GO:0015986(InterPro)|GO:0045261(InterPro)|GO:0046933(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g0607 K02133 - - csv:101205618 955.281
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu03g1232 Clacu-Chr3:23548431 Clacu01g0607 Clacu-Chr1:6330395 2.10E-20 transposed
Clacu07g0758 Clacu-Chr7:18661641 Clacu01g0607 Clacu-Chr1:6330395 1.40E-39 transposed
Clacu11g0859 Clacu-Chr11:8660367 Clacu01g0607 Clacu-Chr1:6330395 7.80E-89 transposed
Clacu06g0890 Clacu-Chr6:11618430 Clacu01g0607 Clacu-Chr1:6330395 3.80E-06 transposed
Clacu10g0951 Clacu-Chr10:20270504 Clacu01g0607 Clacu-Chr1:6330395 1.40E-17 transposed
Clacu01g0607 Clacu-Chr1:6330395 Clacu05g2419 Clacu-Chr5:32471044 4.50E-293 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g390 . Blo16g00724 Bda01g01841 Bda11g00156 Bpe13g01042 . . . Cmo04g01546 Cmo18g00993 . Cma18g00985 Car04g01533 Car18g00906 Sed06g1923 Cpe09g00332 . Bhi07g01249 Tan04g0788 Cmetu03g1471 Lac13g0552 Hepe01g1147 . . Cla05g02261 Cam05g2430 Cec05g2447 Cco05g2493 Clacu05g2419 Cmu05g2286 Cre05g2404 Cone13ag0789 Cone19ag0792 Cone6ag0416 Cone9ag0439 Lsi04g00205 Csa05g02046 Chy10g01193 Cme10g00209 . Blo11g01023 . Bda11g00156 . Bpe02g02015 . Bma06g01100 . Cmo04g02190 Cmo15g00978 Cma04g02088 Cma15g00938 Car04g02027 Car15g00881 Cpe13g00384 . Bhi12g00867 . . . Hepe02g2675 . Lcy10g1453 Cla01g00589 Cam01g0615 Cec01g0606 Cco01g0631 Clacu01g0607 Cmu01g0580 Cre09g1925 Lsi09g00638 . Chy09g00876 Cme09g01409
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000576 6 4 5 5 3 4 4 3 3 2 3 2 4 3 3 7 4 5 2 4 2 0 2 2 3 3 3 6 3 2 102