Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g0610 ATGGCTGTTTTTCCTATCAACTCATCCAACTTGGATCTCTCCATTTCCATGCCGGGCTTTGCTTCTTCATCGACTCGTCCTCCGCTAATGAGAGAATTGGACATGAACCGAGTACCGACGAGAGGAGAAGCAGAAGAAGAATGGGCGGTGGCACCGAGCGCGGAGGAAGAGGAAGAAGAAAGTTGCATTAATAATGGAGGTACTAAGCCAAGGAAGAAGCTTCGCCTGTCAAAAGATCAGTCTCGTCTTCTTGAAGAAAGCTTTAGGCTCAATCATACATTAAACCCTAAGCAAAAGGAAGCATTGGCCATGGAGTTGAAGCTGAAGCCAAGACAAGTTGAAGTTTGGTTTCAGAATCGTAGGGCCAGGAGCAAATTGAAGCAAACTGAGATGGAATGCGAGTATTTGAAGAGATGGTTTGGATCATTAACAGAGCAAAACCATCGGTTGCAGCGGGAACTGGAGGCGCTGAGAGCTATCAAGGTTGCTCCATCGGCCATCGTCTCATGCCACGACCGACAGCCGCCCCTCTCGACGTCTACTATAACCATGTGTCCCCGGTGTGAGCGTATAACATCTAGTAAGGCCGCAATCGCCGCCGCAACAAAGCCATCAAAGGTGGTTACATCCACCCTGAAATTGCATCAGCCGTCGCGAGCTTGTTGA 666 49.1 MAVFPINSSNLDLSISMPGFASSSTRPPLMRELDMNRVPTRGEAEEEWAVAPSAEEEEEESCINNGGTKPRKKLRLSKDQSRLLEESFRLNHTLNPKQKEALAMELKLKPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNHRLQRELEALRAIKVAPSAIVSCHDRQPPLSTSTITMCPRCERITSSKAAIAAATKPSKVVTSTLKLHQPSRAC 221
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6358856 6362238 + ClG42_01g0061000.10 Clacu01g0610 239994
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g0610 221 SMART halz 127 170 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu01g0610 221 FunFam Homeobox-leucine zipper protein 18 54 132 - -
Clacu01g0610 221 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 35 208 IPR050762 -
Clacu01g0610 221 Pfam Homeodomain 71 125 IPR001356 GO:0003677(InterPro)
Clacu01g0610 221 SUPERFAMILY Homeodomain-like 59 128 IPR009057 -
Clacu01g0610 221 ProSiteProfiles 'Homeobox' domain profile. 67 127 IPR001356 GO:0003677(InterPro)
Clacu01g0610 221 SMART HOX_1 69 131 IPR001356 GO:0003677(InterPro)
Clacu01g0610 221 Gene3D - 64 134 - -
Clacu01g0610 221 Pfam Homeobox associated leucine zipper 127 159 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Clacu01g0610 221 CDD homeodomain 70 128 IPR001356 GO:0003677(InterPro)
Clacu01g0610 221 Coils Coil 140 160 - -
Clacu01g0610 221 ProSitePatterns 'Homeobox' domain signature. 102 125 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Clacu01g0610 221 MobiDBLite consensus disorder prediction 39 72 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0610 Clacu-Chr1:6358856 Clacu07g0663 Clacu-Chr7:12501115 2.90E-57 dispersed
Clacu01g0610 Clacu-Chr1:6358856 Clacu09g0379 Clacu-Chr9:3340058 2.40E-35 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46973 PF00046 Homeodomain 9.60E-17 CL0123 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g0610 K09338 - csv:101206325 300.827