Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g0615 ATGACCAAAGAGGAAGATTTTAAGCTACTAAAGTTTCAGACTTGTGATCTCAGAGTGAACATTCACTGTGATGGGTGTAGGCAGAAAGTCAAGAAACTTCTTCAGAGGATAGAAGGAGTGTTTCAGGTTGCCATAGGTGCAGAGAATCAAAAGGTTACCGTTTTAGGAAATGTGGATCCTGCAACTTTGATCAATAAGTTGGTGAGAGCTGGAAAACATGCTGAGCTTTGGTCACAGAAAGCAAACACGAGCCCGAAACCGAAGAACAAAGACGATAAGACTCCGAACAAGGAACCAAAGCATCTCAAACTGACCTCATTCAACTGTGAAGATGACGACATTGTTGATTGTGTTGAGGAAGGAGAAGATTATGAAGCTGCACAACTTCAGTTCAGAGCAGCTAATCTTGATCTCCTTAGGCAGCAAGCAATCGAAGCGAACAATGCTGGGAAAGGCATTGGGATCAACCGAATTCCCGGGCTAAATGGCAAGATGAACAACAACATCAACATCAACAACAAACCTGGGAATGGAAAGAAAATAGACCCTAATCAGCCAATGGCAATAAAAAACACCCCATCTGAGATTGACCGAAAAACTTTGGCAGCTCTGAAGATGAACAATGCTCAACTATTCGGTAACGGCCGAGAAAGTATCAATCTCGGGGAAGCAAAAAGAGCAAACAACAACGATTTGAGTTCAATGATGAGCATGGCAGGGTTCAACGGTGGCAACCTTTTGAATTTTGCCACTCCGTCTTCCATTGATGTCAATTCAACAAACACCTCTCAAGGACTTCACCTCCAACAGAACAATGGCTATGGCTATGGCTACCAGCCATCATCAACCTCTGGATTCTCCATGGCAACTGGTCAATATCATCATCAACAACAACAACAACAACAACAACAACAACCAACCTTCATCAATGGCTACAATCAATACCATCAGCAGCAACCATTGATGAACATGAACAACATGGTAAATAGACAAGCAATGAACCAGCAGCCTCAAATGATGTACAATAGAGCTCAATTGGTTCCACCAAACACAGGATATTACTTCAATTACAATCCAAGCCCTGTTCATCCAAGTTATCCTTATGTTCATGGCCACAATAGTAACTCTGCAGCTGAGATGTTCAGTGATGAGAACACAAGCAGCAGTTGCTCAATCATAAATCAGACTTTGATGTCTTGGTGTAAGGAAATGTCCCTTCATCTCACTTATCCACTCCCGATATTCCCTCGCCAGAATGGCCTCCGGACCAAATCTCAGCCATCGCCCCCGAAGTCGATCGTCTCCTGCTCCGCTCTCAAACGCTACACCGCTGGATGTAAAAGGCAGTATACGAGTGTGATGATAGTTCCGACTGGCGTAGGCGCAGCCATTGGTGGATACGCAGGCGACGCTCTCCCGGTTGCTCGTGCCCTCGCCTCCGTCGTTGATTGCCTTATTACTCACCCTAATGTGCTAAATGCAGCAATGCTTTACTGGCCGATGCATAATGTGCTTTATGTTGAAGGCTATGCACTAGATCGGTTTGCAGAAGGTTCATGGGCCCTAGAGCCTGTTCACCAGAATCGGGTAGGATTGGTTCTTGATGCTGCAATGGAGGAAGAGCTTCGAATTCGTCACTTGCAAGTGGCTGATGCTGCTAGAGCTTCTCTTGGATTGCCCGTGATGGAATATGTTGTCACAGATACACCTCTAATGGTAGAGAAGTGGATTGATCCAAAAACTGGGCAATCAACTGGGAGGATAAGACATCCTGCCTCACTGCTTAGAGCCGTGCAGACATTAATGAACCGGTCGAAGGTGAATGCGGTTGCAGTTGTTGGACGATTCCCAGACGACGATGATGAAGAGACAGACAATTATCGACAAGGGATGGGAGTTGATACTTTGGCAGGGGTTGAGGCTATTATTAGCCATCTTGTGGTGAAGGAGTTTCAGATTCCATGTGCTCATGCTCCTGCTTTGTCACCTACTCCCTTATGCACATCTCTATCTCCAAAATCAGCAGCAGAGGAGTTAGGATTCACATTCTTACCATGTGTACTTTCTGGGCTAAGTAATGCGCCTCAATACTTGAGCAAGAATTCTCAATCATTGGGGAAGGACTGCATATTGGCAGATGATGTTGATAGTGTCATTGTACCTATAAATGCATGTGGAGGGGATGGCACTCTTGCTTTTGCCAGAAGCAAACAGTTCAAGCCACTTATTATTGCGGTCGAGGAAAATGAAACAGTTCTCAGCGATTCTCCAGAGTCACTTGGGATTGAGGCGGTAAAAGTCTCAAATTATTGGGAAGCCATAGGTGTTGTTGCAGCTCACAAGGCAGGAATAGATCCTTATTCCCTTCGAAGAAATAGGATCAACAACATTAATTGCATTTCCAGTACATCTCCTAATGGCCACGCAGTCTCAAGTGCCCCCCCGACAATTCAACTGAGCTTGGATTTTGAACTTGATCAGCTATCTGCAGGATCTGTTGAATTCACCTACAAAAGTTGTTTATACATATTCAACACCTATTTACCAGGGAGGTCGATCGCCGGCGCCGGAGACGTCATGAAGAAAGACTGCACCGATCTCATTCGTCGGATCGCTCTCCTGATTCATCTGGCGGAGGAGATCACAAACTTCTGCAGCGGAAGCAGGGAGAATTTTGAGGCATTGAATGATGATGGGTCTTCTTGTTCGTCTTCTTGGTTGGATTGCCTTTCGGAAGTGGTCGGAGCAATTCAGGCGGCGAAGCGGCTTCTGTACACGGCTTTGACTTTCTCTGTGTGCGACGAGGAGGGCTGTGCGACTTCAACGGAGGGAGCTACTAAAAAATTGGTTCTACAATTCCAATACGTGACAACAAGATTGGAAACTGCACTCTCAAATCTGCCATACGAACACTTTTGTGTCTCAGATGAAGTACAAGAACAGGTTGATTTGGTTAGAGCTCAACTGAGGAGAGCATCAAACAAGTACGAATCTATGTCTAACCCTAAAGAAAAGAAGCTTCAAGCTAGGTCAGGTTCTGTAAAATGGATGATCAGTAATGATGTCAAGAGCATGTCTAGTGTTGATGATGGAGATGTCGAGTCTCAGCATCATCGTCCTCGGAACCGCGACCACTTGACTAGTTTCGATTCGTTGAATTCTTGCTTTGATGATTGTTCAAGTGTTGTTCATTCTGATATGGAAGATGTTATAGCAAGCAAGAGCCAAGATGAGGTTAAAAAGCCTGTTGAAATTGAAATTCCTGAAAACTTCCTATGCCCCATTTCCTTTGAGTTGATGTTGAATCCCGTCATTGTCTCTACGGGACAGACATATGAAAGATCCAACATACAGAATTGGATAGACAGAGGAAATAGAATATGTCCAAAAACTCAAGAGCAGCTCCAATCTCTGATCCTCACTCCAAATTTTGTTATGAGAAAATTGATCTCTGAATGGTGTGAAGAGCATAATGTGAAGCTAGAGGAAGGATTAACCAACAGGAAACTTAAGAAGTATAGATCATTTGAGGACGATTGCCAAAGGACTGTGTCGATCAAAACTCTGGTTCGACACCTTTCATTCGGGTCGATTCAGGAGCAGAAGATCGCCGTGACCGAGATTCGAAAGCTATCAAAAAGTAGCTCAGATCATAGAGTTGAAATAGCAGAAGCAGGAGCAATCCCACAACTGGTTAACCTTTTAACTTCAAAGGATGTTGCAACACAAGAGAATGCAATTTCTTGCATTCTCAACCTTTCACTTCAAGAGCAAAACAAAAGACTTATTATGCTTTCTGGTGCTGTTTCTTACATTTCGCAAGTCCTCAAAGTTGGGAGCATGGAAGGGAGAGAGTGTGCCGCTGCAACAATTTACAGCTTGTCATTAGCCGATGAGAACAAGGCGATAATTGGGGCTTCCGGAGTGATCTCGGACCTGTTAGAAATCCTCGAGATCGGTAGTCCGAGAGGGCAAAAAGATGCTGCAGGAGCTCTATTGAATTTGTGTATGCACCAAGGGAATAAGGGCAGGGCTTTGAAGGTTGGGATTGTCAAACCATTGTTGAAAATGCTCTCTGATTCAAATGGTTCTTTGGTTGATGATGCTCTCTATATAATGTCGGTACTTTGCGGCCATCCAGAGGCGAAGGCTACGATGTCGAATGCGAATTCACTACTTGTTTTGACTGACATTCTGAAGACGGGGTCGCCTCGCAGCAAGGAAAATGCAGCTGCTGTTCTGCTTGCATTATGCAAGGGAGATTGGGAGAAGCTGGAATGGTTAACCAGACTTGGCGTGGTGGTGTCGTTGATGAAACTTGCCAATAATGGCACGGCGAGAGCGAGGCGAAAGGCTGCTTTATTGTTGGACCAACTCGGAAAATCATGA 4389 44.7 MTKEEDFKLLKFQTCDLRVNIHCDGCRQKVKKLLQRIEGVFQVAIGAENQKVTVLGNVDPATLINKLVRAGKHAELWSQKANTSPKPKNKDDKTPNKEPKHLKLTSFNCEDDDIVDCVEEGEDYEAAQLQFRAANLDLLRQQAIEANNAGKGIGINRIPGLNGKMNNNININNKPGNGKKIDPNQPMAIKNTPSEIDRKTLAALKMNNAQLFGNGRESINLGEAKRANNNDLSSMMSMAGFNGGNLLNFATPSSIDVNSTNTSQGLHLQQNNGYGYGYQPSSTSGFSMATGQYHHQQQQQQQQQQPTFINGYNQYHQQQPLMNMNNMVNRQAMNQQPQMMYNRAQLVPPNTGYYFNYNPSPVHPSYPYVHGHNSNSAAEMFSDENTSSSCSIINQTLMSWCKEMSLHLTYPLPIFPRQNGLRTKSQPSPPKSIVSCSALKRYTAGCKRQYTSVMIVPTGVGAAIGGYAGDALPVARALASVVDCLITHPNVLNAAMLYWPMHNVLYVEGYALDRFAEGSWALEPVHQNRVGLVLDAAMEEELRIRHLQVADAARASLGLPVMEYVVTDTPLMVEKWIDPKTGQSTGRIRHPASLLRAVQTLMNRSKVNAVAVVGRFPDDDDEETDNYRQGMGVDTLAGVEAIISHLVVKEFQIPCAHAPALSPTPLCTSLSPKSAAEELGFTFLPCVLSGLSNAPQYLSKNSQSLGKDCILADDVDSVIVPINACGGDGTLAFARSKQFKPLIIAVEENETVLSDSPESLGIEAVKVSNYWEAIGVVAAHKAGIDPYSLRRNRINNINCISSTSPNGHAVSSAPPTIQLSLDFELDQLSAGSVEFTYKSCLYIFNTYLPGRSIAGAGDVMKKDCTDLIRRIALLIHLAEEITNFCSGSRENFEALNDDGSSCSSSWLDCLSEVVGAIQAAKRLLYTALTFSVCDEEGCATSTEGATKKLVLQFQYVTTRLETALSNLPYEHFCVSDEVQEQVDLVRAQLRRASNKYESMSNPKEKKLQARSGSVKWMISNDVKSMSSVDDGDVESQHHRPRNRDHLTSFDSLNSCFDDCSSVVHSDMEDVIASKSQDEVKKPVEIEIPENFLCPISFELMLNPVIVSTGQTYERSNIQNWIDRGNRICPKTQEQLQSLILTPNFVMRKLISEWCEEHNVKLEEGLTNRKLKKYRSFEDDCQRTVSIKTLVRHLSFGSIQEQKIAVTEIRKLSKSSSDHRVEIAEAGAIPQLVNLLTSKDVATQENAISCILNLSLQEQNKRLIMLSGAVSYISQVLKVGSMEGRECAAATIYSLSLADENKAIIGASGVISDLLEILEIGSPRGQKDAAGALLNLCMHQGNKGRALKVGIVKPLLKMLSDSNGSLVDDALYIMSVLCGHPEAKATMSNANSLLVLTDILKTGSPRSKENAAAVLLALCKGDWEKLEWLTRLGVVVSLMKLANNGTARARRKAALLLDQLGKS 1462
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6458410 6472629 - ClG42_01g0061500.10 Clacu01g0615 239999
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g0615 1462 MobiDBLite consensus disorder prediction 1025 1044 - -
Clacu01g0615 1462 Pfam Armadillo/beta-catenin-like repeat 1215 1254 IPR000225 GO:0005515(InterPro)
Clacu01g0615 1462 Coils Coil 975 995 - -
Clacu01g0615 1462 PANTHER OS01G0127400 PROTEIN 422 812 IPR021763 -
Clacu01g0615 1462 MobiDBLite consensus disorder prediction 75 101 - -
Clacu01g0615 1462 ProSiteProfiles Heavy-metal-associated domain profile. 12 75 IPR006121 GO:0046872(InterPro)
Clacu01g0615 1462 ProSiteProfiles U-box domain profile. 1086 1160 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Clacu01g0615 1462 CDD HMA 16 75 IPR006121 GO:0046872(InterPro)
Clacu01g0615 1462 SUPERFAMILY RING/U-box 1082 1160 - -
Clacu01g0615 1462 CDD RING-Ubox_PUB 1088 1140 IPR045210 -
Clacu01g0615 1462 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1086 1162 IPR013083 -
Clacu01g0615 1462 Pfam Heavy-metal-associated domain 17 73 IPR006121 GO:0046872(InterPro)
Clacu01g0615 1462 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 1226 1268 IPR000225 GO:0005515(InterPro)
Clacu01g0615 1462 Gene3D - 1183 1302 IPR011989 -
Clacu01g0615 1462 MobiDBLite consensus disorder prediction 85 101 - -
Clacu01g0615 1462 SUPERFAMILY HMA, heavy metal-associated domain 14 78 IPR036163 GO:0046872(InterPro)
Clacu01g0615 1462 SMART arm_5 1338 1378 IPR000225 GO:0005515(InterPro)
Clacu01g0615 1462 SMART arm_5 1215 1255 IPR000225 GO:0005515(InterPro)
Clacu01g0615 1462 SMART arm_5 1297 1337 IPR000225 GO:0005515(InterPro)
Clacu01g0615 1462 SMART arm_5 1379 1419 IPR000225 GO:0005515(InterPro)
Clacu01g0615 1462 SMART arm_5 1256 1296 IPR000225 GO:0005515(InterPro)
Clacu01g0615 1462 Gene3D - 1303 1461 IPR011989 -
Clacu01g0615 1462 SUPERFAMILY ARM repeat 1185 1459 IPR016024 -
Clacu01g0615 1462 Gene3D - 12 83 - -
Clacu01g0615 1462 MobiDBLite consensus disorder prediction 1027 1044 - -
Clacu01g0615 1462 Pfam U-box domain 1087 1158 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Clacu01g0615 1462 SMART Ubox_2 1090 1153 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Clacu01g0615 1462 Pfam Protein of unknown function (DUF3326) 451 790 IPR021763 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0615 Clacu-Chr1:6458410 Clacu05g2310 Clacu-Chr5:31476280 1.20E-53 dispersed
Clacu07g0636 Clacu-Chr7:10691058 Clacu01g0615 Clacu-Chr1:6458410 6.50E-97 transposed
Clacu09g0669 Clacu-Chr9:5803033 Clacu01g0615 Clacu-Chr1:6458410 6.50E-07 transposed
Clacu01g0615 Clacu-Chr1:6458410 Clacu05g2536 Clacu-Chr5:33431751 1.40E-06 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g0615 - - - 0.0