Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g0632 ATGGAACACTTTTTGGGTCTTCTCCGAATTCGGGTGCTGCGCGGTGTTAATCTCGCTATTCGTGATTCTCGTAGCAGCGATCCTTATGTCGTCGTCACAATGGGTGAGCAGAGGTTGAAGACCCGGGTGGTGAAAAATAATTGCAACCCTGAATGGAACGATGAGTTGACTCTTTCAATTGCAGATCTCAGGACTCCAATCGGTATATCAGTGTATGACAAAGACACACTAACAGACCATGACAAAATGGGAGATGCCGAGATCGACATCGAACCATACATCGAATGTTTGACAATGGGACTGGAGAGCCTCCCAGATGGGTGTGTGGTTAAGAGAGTATATCCAAAAAGAACAAACAATTTAGCTGATGAGAGCCAATGTGTTTGGCACAAGGGGAAAATTGTACAGAACATGTTCCTGAGGTTGAAGAACGTGGAGTGTGGTGAGGTAGCAATTCAGCTCGAATGGATCGACGTTCCTGGTGCTAAGGGTTTGCCAGTCGGGGGTACAAGCAACTTCTGA 522 46.55 MEHFLGLLRIRVLRGVNLAIRDSRSSDPYVVVTMGEQRLKTRVVKNNCNPEWNDELTLSIADLRTPIGISVYDKDTLTDHDKMGDAEIDIEPYIECLTMGLESLPDGCVVKRVYPKRTNNLADESQCVWHKGKIVQNMFLRLKNVECGEVAIQLEWIDVPGAKGLPVGGTSNF 173
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6653568 6655446 + ClG42_01g0063200.10 Clacu01g0632 240016
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g0632 173 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2 158 IPR035892 -
Clacu01g0632 173 Pfam C2 domain 6 92 IPR000008 -
Clacu01g0632 173 SMART C2_3c 7 102 IPR000008 -
Clacu01g0632 173 Gene3D C2 domain 5 164 IPR035892 -
Clacu01g0632 173 ProSiteProfiles C2 domain profile. 1 106 IPR000008 -
Clacu01g0632 173 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 1 163 IPR044562 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0632 Clacu-Chr1:6653568 Clacu07g0610 Clacu-Chr7:9628216 7.10E-59 dispersed
Clacu01g0632 Clacu-Chr1:6653568 Clacu04g1115 Clacu-Chr4:25401543 3.30E-56 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g0632 - - - 0.0