Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g0633 ATGAAGAGGGAACATCACCATCTTCATCCCCGTCCGGAGCCGCTTTCCATGGCTGCCGTCCCTAATGGGGAGAGTTATTTGAACACTGGTAAGGCTAAACTCTGGGAGGAGGAAGCGCAGCTCGATGGAGGAGCGGATGAGCTTCTTGCTGTTTTGGGTTATAAGGTTAAGTCGTCGGACATGGCGGAAGTTGCTCAGAAGCTCGAACAGCTTGAAGAAGCGATGTGTCAAAATCAGGACACTGGCCTATCGCATCTCGCTTTTGACACTGTTCATTATAATCCCTCTGATCTGTCAACTTGGCTTGAAAGTATGCTCATGGAGCTCCATCCGACGCCTAATTTTGCGCCGCTGCCACCTCCTTCGCAGCTGGACGATTCGTCGTTTTTAGCTCCGGCGGAATCCTCCACCATCACTTCCATTGATATCGACCCTCAACGGCAAACCAGCAACCGGATTTTCGAGGAATCTTCTAGTTCTGATTACGACCTTAAAGCTATCACAAGCAGCGCGATTTATTCACCGAGAGAGAATAAACGTTTGAAATCCTCTGAGTCGGACTCGGACTTGTTCTCCACCTCGGCGATTGGGGCTTCCGATTCTGTAACTCGCCCGGTCGTCCTCGTCGATTCGCAGGAGAATGGAATTCAACTGGTTCATGCTCTGATGGCTTGTGCCGAAGCTGTACAGCAGAACGATCTGAATCTAGCGGAGGCTCTGGTGAAGCGAATCGGTTACTTGGCGATTTCTCAAGCCGGAGCGATGAGGAAGGTCGCCACGTTCTTCGCCGAAGCGTTGGCACGCCGAATCTACAGGCTCCGCCCTGAGAATCCCCTCGATCATTCAGTGTCCGATAGGCTTCAGATGCATTTCTACGAGAGCTGTCCATATCTGAAATTCGCGCATTTCACCGCGAATCAAGCGATTCTCGAAGCCTTCGAAGGGAAGAAGCGTGTTCACGTAATCGATTTCTCGATGAACCGAGGGATGCAGTGGCCGGCTCTGATTCAAGCCCTAGCTCTACGGCCGAATGGTCCTCCAGCCTTCCGCCTCACTGGAATTGGCCCTCCGGCGCCGGATAACTCAGATTACCTCCAAGAAGTGGGCTGGAAACTCGCTGAATTGGCCGAAGCTATCCATGTGGAGTTCGAGTACAGAGGATTTGTAGCGAATAGCTTGGCGGATCTGGACGCATCGATGCTGGAGCTCCGGCCGAGCGAGGTGGAATCGGTGGTGGTGAACTCAGTGTTTGAGCTGCATAAGTTACTCGCTCGGCCTGGTGCCCTCGAAAAGGTTCTGTCGGTGGTGAAGCAGATGAAGCCGGAGATCATAACGGTGGTGGAGCAGGAAGCGAACCACAACGGTCCGGTTTTCGTGGACCGGTTCACTGAGTCACTCCATTACTACTCGACGCTTTTTGACTCGTTGGAAGGCTCCCCCAACAACCAAGACAAGATCATGTCCGAAATGTACCTTGGGAAGCAAATTTGCAACGTTGTGGCTTGTGAAGGCGCGGACCGAGTGGAACGTCACGAGACCCTGACTCAGTGGCGGACTCGGTTGTCCTCTGCCGGGTTCGAACCCATCCACCTTGGCTCGAACGCATTCAAGCAAGCTAGTATGCTCCTCGCCCTATTCGGCAGCGGAGAAGGCTACCAGGTGGAAGAAAACAACGGATCACTAATGCTAGGGTGGCACACTCGCCCCCTCATCGCCACATCCGCCTGGAAACTCGGCAACAACCCGGTGGTCGCTCACTGA 1761 53.49 MKREHHHLHPRPEPLSMAAVPNGESYLNTGKAKLWEEEAQLDGGADELLAVLGYKVKSSDMAEVAQKLEQLEEAMCQNQDTGLSHLAFDTVHYNPSDLSTWLESMLMELHPTPNFAPLPPPSQLDDSSFLAPAESSTITSIDIDPQRQTSNRIFEESSSSDYDLKAITSSAIYSPRENKRLKSSESDSDLFSTSAIGASDSVTRPVVLVDSQENGIQLVHALMACAEAVQQNDLNLAEALVKRIGYLAISQAGAMRKVATFFAEALARRIYRLRPENPLDHSVSDRLQMHFYESCPYLKFAHFTANQAILEAFEGKKRVHVIDFSMNRGMQWPALIQALALRPNGPPAFRLTGIGPPAPDNSDYLQEVGWKLAELAEAIHVEFEYRGFVANSLADLDASMLELRPSEVESVVVNSVFELHKLLARPGALEKVLSVVKQMKPEIITVVEQEANHNGPVFVDRFTESLHYYSTLFDSLEGSPNNQDKIMSEMYLGKQICNVVACEGADRVERHETLTQWRTRLSSAGFEPIHLGSNAFKQASMLLALFGSGEGYQVEENNGSLMLGWHTRPLIATSAWKLGNNPVVAH 586
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6666773 6668533 - ClG42_01g0063300.10 Clacu01g0633 240017
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g0633 586 MobiDBLite consensus disorder prediction 1 21 - -
Clacu01g0633 586 Gene3D - 44 109 IPR038088 -
Clacu01g0633 586 ProSiteProfiles GRAS family profile. 209 577 IPR005202 -
Clacu01g0633 586 Pfam Transcriptional regulator DELLA protein N terminal 46 113 IPR021914 -
Clacu01g0633 586 Coils Coil 54 74 - -
Clacu01g0633 586 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 180 576 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009723(PANTHER)|GO:0009737(PANTHER)|GO:0009863(PANTHER)|GO:0009867(PANTHER)|GO:0009938(PANTHER)|GO:0010187(PANTHER)|GO:0042538(PANTHER)|GO:0043565(PANTHER)|GO:2000033(PANTHER)|GO:2000377(PANTHER)
Clacu01g0633 586 Pfam GRAS domain family 218 577 IPR005202 -
Clacu01g0633 586 FunFam DELLA protein GAI 44 109 - -
Clacu01g0633 586 SMART DELLA_2 46 119 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0633 Clacu-Chr1:6666773 Clacu03g0853 Clacu-Chr3:10114291 1.60E-192 dispersed
Clacu01g0633 Clacu-Chr1:6666773 Clacu01g2009 Clacu-Chr1:32012370 1.20E-46 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46974 PF03514 GRAS 1.60E-135 CL0063 Clacu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g0633 K14494 - csv:101204164 1091.64