Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Clacu01g0639 ATGTCTTGCTCCCAAACCCCTTATCCAGACCTCTGCTTCCATTACATAAACTCGAACAACCACGCATCGACTGCCGGTATTGGTGAAACTTCTCTCATCGTCACTGATCACTTTCAAAACTCAGCCATTCGATCCACTTTGAACCAAGCCATGATTGTCCATGACCATCTTCGCTCCGCCATGGTTCTTGATTCATTTGATGACGACGACAGAACTAAATTCGCTTTAATCGATTGTTTGGAACTCTATGAGGATTCGATCGCCGAGCTCAATCATTCGGCAATCAGTTTCATGAATATCAATTCGATTGACCACTTGACGTTGTTAAGTGCTTCATTAGCGAACCATCAAACATGTCAAGATGGATTTCGAGATTTTGGATTTTCGTCTGATGATTTGAATAATTTCTTTTTTCCATTTCAAATTTTGAGTAACTTCTCAAAATTGGTTAGCAATTCTCTTGCCATCACGAAGGCCGCCACGGCAGCCGCCGCCACTAGTTCCTCCAACTCCGGTGGCCGACGGTTGTTAGGTGGCTCGTTTCCCAAGTGGGTTTACAATGATGATAGGATGCTCCTTCAGGGCGTGGTCGGGAATCGCGCAGATATGGTGGTCGCCCAAGATGGAAGCGGCAATTTTAGGACGATATCGGAGGCGGTGGCCGCGGCGGAGGAGGCGAGGAAGGGAAGTGGAAGGTTTGTTATATATGTAAAAGGTGGGATTTACAAAGAGAATGTTGTGATTAAGAAGAGGATGAAGAATATAATGATGATTGGAGACGGGATTGATAGGACGACCGTCACGGCCATGAAGAACGTCCAAGATGGATCAACTACTTTCCGATCAGCCACTTTTGCGGTGGCCGGCGAAGGATTCATCGCCAAAGACATGACGTTCGAGAACACGGCGGGGCCAGAGAAACACCAAGCTGTCGCACTCCGATCTAATGCTGATCGCTCACTTTTCTACCGATGCAGCTTCAAAGGCTACCAAGACACTTTGTACGCCCACTCCAACCGCCAGTTCTATCGTGAATGCCACATTTACGGAACTGTCGACTTCATTTTCGGCGACGGCATTGCTGTTTTTCAAAACTGCAACATCTTTGTCAGAAAGCCGATGATGCACCAAAAAAATACCATCACGGCGCAGGCGAGGTCGGACCCAAATGAGAACACCGGGTTCGTGATCCACAATTCCGTCATCGGAGCAGCGCCGGACTTGAAGCCGGTGGAGGGTATGTACGGAACTTATTTGGGGAGGCCATGGAAGGTGTATTCGAGGACAGTGATAATGAAGAGTTTTTTGGATGGTCTGATTGAACCGGCCGGGTGGCTTCCTTGGGCCGGAGATTTCGGTCTGAGGACGGTTTATTATGGCGAGTTTATGAACGCTGGTGGTGGAGCAAATACGAAAGGGAGGGTGCGGTGGCCGGGATACCATGTGATGACGAGTGCGGCGGAGGCTGAGAGGTTCACGGTGGAGAATTTCTTGGAAGGAGGAGGTTGGATTCCGGCCACCGGAGTGCCATTCGCAAATGGGCTATGA 1548 49.03 MSCSQTPYPDLCFHYINSNNHASTAGIGETSLIVTDHFQNSAIRSTLNQAMIVHDHLRSAMVLDSFDDDDRTKFALIDCLELYEDSIAELNHSAISFMNINSIDHLTLLSASLANHQTCQDGFRDFGFSSDDLNNFFFPFQILSNFSKLVSNSLAITKAATAAAATSSSNSGGRRLLGGSFPKWVYNDDRMLLQGVVGNRADMVVAQDGSGNFRTISEAVAAAEEARKGSGRFVIYVKGGIYKENVVIKKRMKNIMMIGDGIDRTTVTAMKNVQDGSTTFRSATFAVAGEGFIAKDMTFENTAGPEKHQAVALRSNADRSLFYRCSFKGYQDTLYAHSNRQFYRECHIYGTVDFIFGDGIAVFQNCNIFVRKPMMHQKNTITAQARSDPNENTGFVIHNSVIGAAPDLKPVEGMYGTYLGRPWKVYSRTVIMKSFLDGLIEPAGWLPWAGDFGLRTVYYGEFMNAGGGANTKGRVRWPGYHVMTSAAEAERFTVENFLEGGGWIPATGVPFANGL 515
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6814566 6816902 - ClG42_01g0063900.10 Clacu01g0639 240023
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Clacu01g0639 515 ProSitePatterns Pectinesterase signature 1. 229 248 IPR018040 -
Clacu01g0639 515 Gene3D Invertase/pectin methylesterase inhibitor family protein 1 160 IPR035513 -
Clacu01g0639 515 NCBIfam pectinesterase inhibitor domain 2 158 IPR006501 GO:0004857(InterPro)
Clacu01g0639 515 CDD PMEI-like_3 2 154 - -
Clacu01g0639 515 SMART PMEI_2 1 156 IPR006501 GO:0004857(InterPro)
Clacu01g0639 515 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 2 158 IPR035513 -
Clacu01g0639 515 ProSitePatterns Pectinesterase signature 2. 348 357 IPR033131 -
Clacu01g0639 515 Pfam Pectinesterase 202 500 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Clacu01g0639 515 Gene3D - 198 515 IPR012334 -
Clacu01g0639 515 PANTHER PECTINESTERASE 2 506 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Clacu01g0639 515 FunFam Pectinesterase 197 515 - -
Clacu01g0639 515 SUPERFAMILY Pectin lyase-like 200 513 IPR011050 -
Clacu01g0639 515 Pfam Plant invertase/pectin methylesterase inhibitor 2 156 IPR006501 GO:0004857(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Clacu01g0639 Clacu-Chr1:6814566 Clacu05g0865 Clacu-Chr5:7575506 7.80E-130 dispersed
Clacu01g0486 Clacu-Chr1:4787243 Clacu01g0639 Clacu-Chr1:6814566 4.80E-113 transposed
Clacu09g2093 Clacu-Chr9:35723774 Clacu01g0639 Clacu-Chr1:6814566 3.70E-72 transposed
Clacu10g0596 Clacu-Chr10:7775859 Clacu01g0639 Clacu-Chr1:6814566 6.80E-115 transposed
Clacu01g0639 Clacu-Chr1:6814566 Clacu05g2398 Clacu-Chr5:32299462 2.10E-103 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Clacu01g0639 - - - 0.0